Variant report

Variant	rs35762205
Chromosome Location	chr1:150297918-150297919
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150296995..150298900-chr1:150319856..150322164,2	MCF-7	breast:
2	chr1:150291489..150302169-chr1:150333998..150340807,28	MCF-7	breast:
3	chr1:150296747..150298839-chr1:150303335..150306497,3	MCF-7	breast:
4	chr1:150297383..150299658-chr1:150314813..150316807,2	MCF-7	breast:
5	chr1:150206524..150209622-chr1:150296394..150298865,3	K562	blood:
6	chr1:150297591..150299496-chr1:150301624..150303136,2	MCF-7	breast:
7	chr1:150297292..150298867-chr1:150320567..150322957,2	K562	blood:

Variant related genes	Relation type
ENSG00000222222	Chromatin interaction
ENSG00000117360	Chromatin interaction
ENSG00000163125	Chromatin interaction
ENSG00000143401	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11799813	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11800656	1.00[ASN][1000 genomes]
rs11801190	1.00[ASN][1000 genomes]
rs11802612	1.00[ASN][1000 genomes]
rs11803448	1.00[ASN][1000 genomes]
rs11806171	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807119	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11809332	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12723364	1.00[ASN][1000 genomes]
rs12724450	1.00[ASN][1000 genomes]
rs12729727	1.00[ASN][1000 genomes]
rs12730265	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12733783	0.94[EUR][1000 genomes]
rs12735903	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12736584	1.00[ASN][1000 genomes]
rs12743761	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12745672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749958	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12756583	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12759551	1.00[ASN][1000 genomes]
rs28495360	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34001546	1.00[ASN][1000 genomes]
rs34233130	1.00[ASN][1000 genomes]
rs34307322	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34347495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34448981	1.00[ASN][1000 genomes]
rs34514406	1.00[ASN][1000 genomes]
rs34542152	1.00[ASN][1000 genomes]
rs34609268	1.00[ASN][1000 genomes]
rs34964511	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35094010	1.00[ASN][1000 genomes]
rs35347210	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35437473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35839143	1.00[ASN][1000 genomes]
rs35935423	1.00[ASN][1000 genomes]
rs4845	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56214117	1.00[ASN][1000 genomes]
rs58427317	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58853199	1.00[ASN][1000 genomes]
rs71515775	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622688	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622689	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622695	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622696	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622697	0.81[EUR][1000 genomes]
rs71622698	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622702	1.00[ASN][1000 genomes]
rs74124663	1.00[ASN][1000 genomes]
rs74124686	1.00[ASN][1000 genomes]
rs7517003	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7535275	1.00[ASN][1000 genomes]
rs7546610	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150294600-150299200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:150294600-150301200	Weak transcription	Pancreas	Pancrea
3	chr1:150294800-150299200	Weak transcription	Aorta	Aorta
4	chr1:150294800-150305400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:150295000-150298000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:150295000-150298000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:150295000-150298200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:150295000-150299200	Weak transcription	Gastric	stomach
9	chr1:150295000-150300400	Weak transcription	Esophagus	oesophagus
10	chr1:150295000-150304800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr1:150295000-150304800	Weak transcription	Fetal Heart	heart
12	chr1:150295200-150304800	Weak transcription	Stomach Mucosa	stomach
13	chr1:150295200-150331800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:150295400-150298000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:150295400-150298000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:150295400-150298000	Weak transcription	Small Intestine	intestine
17	chr1:150295400-150304800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:150295400-150321200	Strong transcription	Fetal Stomach	stomach
19	chr1:150295400-150329600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:150295600-150298000	Weak transcription	Primary B cells from cord blood	blood
21	chr1:150295600-150298000	Weak transcription	Psoas Muscle	Psoas
22	chr1:150295600-150299000	Genic enhancers	Dnd41	blood
23	chr1:150295600-150299400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
24	chr1:150295600-150321400	Strong transcription	Fetal Intestine Small	intestine
25	chr1:150295600-150328200	Strong transcription	Primary B cells from peripheral blood	blood
26	chr1:150295800-150329800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr1:150296000-150301000	Strong transcription	HSMM	muscle
28	chr1:150296000-150302200	Strong transcription	GM12878-XiMat	blood
29	chr1:150296000-150329800	Strong transcription	Fetal Intestine Large	intestine
30	chr1:150296000-150329800	Strong transcription	Fetal Thymus	thymus
31	chr1:150296200-150298600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
32	chr1:150296200-150326800	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr1:150296400-150328600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr1:150296400-150328600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr1:150296600-150302400	Strong transcription	Brain Inferior Temporal Lobe	brain
36	chr1:150296600-150305200	Strong transcription	Brain Angular Gyrus	brain
37	chr1:150296600-150322400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr1:150296600-150326800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr1:150296600-150327200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr1:150296600-150327200	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr1:150296600-150328400	Strong transcription	Placenta	Placenta
42	chr1:150296600-150328600	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr1:150296600-150328600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:150296600-150328800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:150296600-150329600	Strong transcription	Fetal Muscle Trunk	muscle
46	chr1:150296800-150302000	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr1:150296800-150302400	Strong transcription	Primary hematopoietic stem cells	blood
48	chr1:150296800-150302800	Strong transcription	Primary T cells from cord blood	blood
49	chr1:150296800-150302800	Strong transcription	A549	lung
50	chr1:150296800-150319800	Strong transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links