Variant report

Variant	rs35839143
Chromosome Location	chr1:150495145-150495146
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150487651..150489770-chr1:150493797..150495411,2	MCF-7	breast:
2	chr1:150494750..150496538-chr1:150523339..150524866,2	K562	blood:
3	chr1:150488026..150490995-chr1:150492284..150496607,5	MCF-7	breast:
4	chr1:150492880..150495279-chr1:150516728..150518247,2	K562	blood:
5	chr1:150486848..150489807-chr1:150493277..150496386,3	K562	blood:
6	chr1:150485402..150490792-chr1:150492621..150497993,6	K562	blood:

Variant related genes	Relation type
ENSG00000143382	Chromatin interaction
ENSG00000228126	Chromatin interaction
ENSG00000264553	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11799813	1.00[ASN][1000 genomes]
rs11800656	1.00[ASN][1000 genomes]
rs11801190	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802612	1.00[ASN][1000 genomes]
rs11803448	1.00[ASN][1000 genomes]
rs11803617	0.81[EUR][1000 genomes]
rs11806171	1.00[ASN][1000 genomes]
rs11807119	1.00[ASN][1000 genomes]
rs11809332	1.00[ASN][1000 genomes]
rs11810419	0.89[EUR][1000 genomes]
rs12723364	1.00[ASN][1000 genomes]
rs12724450	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12729727	1.00[ASN][1000 genomes]
rs12730265	1.00[ASN][1000 genomes]
rs12735903	1.00[ASN][1000 genomes]
rs12736584	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12743761	1.00[ASN][1000 genomes]
rs12745672	1.00[ASN][1000 genomes]
rs12749958	1.00[ASN][1000 genomes]
rs12756583	1.00[ASN][1000 genomes]
rs12759551	1.00[ASN][1000 genomes]
rs28495360	1.00[ASN][1000 genomes]
rs34001546	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34233130	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34307322	1.00[ASN][1000 genomes]
rs34347495	1.00[ASN][1000 genomes]
rs34448981	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34514406	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34542152	1.00[ASN][1000 genomes]
rs34609268	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34629240	0.80[EUR][1000 genomes]
rs34964511	1.00[ASN][1000 genomes]
rs35094010	1.00[ASN][1000 genomes]
rs35347210	1.00[ASN][1000 genomes]
rs35437473	1.00[ASN][1000 genomes]
rs35762205	1.00[ASN][1000 genomes]
rs35935423	1.00[ASN][1000 genomes]
rs4845	1.00[ASN][1000 genomes]
rs56214117	1.00[ASN][1000 genomes]
rs58427317	1.00[ASN][1000 genomes]
rs58853199	1.00[ASN][1000 genomes]
rs71515775	1.00[ASN][1000 genomes]
rs71622688	1.00[ASN][1000 genomes]
rs71622689	1.00[ASN][1000 genomes]
rs71622694	1.00[ASN][1000 genomes]
rs71622695	1.00[ASN][1000 genomes]
rs71622696	1.00[ASN][1000 genomes]
rs71622698	1.00[ASN][1000 genomes]
rs71622702	1.00[ASN][1000 genomes]
rs74124663	1.00[ASN][1000 genomes]
rs74124686	1.00[ASN][1000 genomes]
rs7517003	1.00[ASN][1000 genomes]
rs7535275	1.00[ASN][1000 genomes]
rs7546610	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
2	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
3	esv1814231	chr1:150479528-150540117	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150489000-150505400	Weak transcription	Right Ventricle	heart
2	chr1:150489200-150498200	Weak transcription	Fetal Intestine Small	intestine
3	chr1:150489200-150501800	Weak transcription	Right Atrium	heart
4	chr1:150489400-150497000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:150489400-150500200	Weak transcription	Osteobl	bone
6	chr1:150489400-150500400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:150489600-150498400	Weak transcription	Fetal Stomach	stomach
8	chr1:150489600-150501600	Weak transcription	Brain Anterior Caudate	brain
9	chr1:150490600-150500400	Weak transcription	Stomach Mucosa	stomach
10	chr1:150494400-150495200	Enhancers	Psoas Muscle	Psoas
11	chr1:150494400-150500400	Weak transcription	HSMMtube	muscle

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