Variant report

Variant	rs74124686
Chromosome Location	chr1:150416621-150416622
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150415565..150418212-chr1:151299345..151301312,2	MCF-7	breast:
2	chr1:150334579..150339410-chr1:150416568..150421026,6	MCF-7	breast:
3	chr1:150335493..150339084-chr1:150413867..150416621,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143393	Chromatin interaction
ENSG00000273481	Chromatin interaction
ENSG00000163125	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11799813	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11800656	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11801190	1.00[ASN][1000 genomes]
rs11801255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11802612	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11803448	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11806171	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807119	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11809332	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12718416	0.87[EUR][1000 genomes]
rs12723364	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12724450	1.00[ASN][1000 genomes]
rs12729727	1.00[ASN][1000 genomes]
rs12730265	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12735903	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12736584	1.00[ASN][1000 genomes]
rs12743761	1.00[ASN][1000 genomes]
rs12745672	1.00[ASN][1000 genomes]
rs12749958	1.00[ASN][1000 genomes]
rs12756583	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12759551	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28495360	1.00[ASN][1000 genomes]
rs34001546	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34233130	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34307322	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34347495	1.00[ASN][1000 genomes]
rs34448981	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34514406	1.00[ASN][1000 genomes]
rs34542152	1.00[ASN][1000 genomes]
rs34609268	1.00[ASN][1000 genomes]
rs34629240	0.91[EUR][1000 genomes]
rs34696422	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34964511	1.00[ASN][1000 genomes]
rs35094010	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35347210	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35437473	1.00[ASN][1000 genomes]
rs35762205	1.00[ASN][1000 genomes]
rs35839143	1.00[ASN][1000 genomes]
rs35935423	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4845	1.00[ASN][1000 genomes]
rs56214117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57323357	0.91[EUR][1000 genomes]
rs58427317	1.00[ASN][1000 genomes]
rs58853199	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61817552	0.94[AFR][1000 genomes]
rs71515775	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622688	1.00[ASN][1000 genomes]
rs71622689	1.00[ASN][1000 genomes]
rs71622694	1.00[ASN][1000 genomes]
rs71622695	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622696	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622697	0.86[EUR][1000 genomes]
rs71622698	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622702	1.00[ASN][1000 genomes]
rs74124663	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517003	1.00[ASN][1000 genomes]
rs7535275	1.00[ASN][1000 genomes]
rs7546610	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150340000-150416800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:150373200-150442800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:150380600-150429800	Weak transcription	Aorta	Aorta
4	chr1:150381800-150417400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:150382000-150418200	Weak transcription	Colonic Mucosa	Colon
6	chr1:150382000-150432400	Weak transcription	Fetal Brain Male	brain
7	chr1:150383400-150419000	Weak transcription	Fetal Kidney	kidney
8	chr1:150383400-150419000	Weak transcription	Gastric	stomach
9	chr1:150383400-150432200	Weak transcription	Right Ventricle	heart
10	chr1:150383400-150443200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:150383600-150416800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:150383600-150418200	Weak transcription	Pancreas	Pancrea
13	chr1:150386800-150429800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:150388600-150416800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr1:150389400-150423400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:150389600-150417000	Weak transcription	HMEC	breast
17	chr1:150390000-150429600	Weak transcription	A549	lung
18	chr1:150391600-150416800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:150391800-150416800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr1:150392600-150418400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:150393200-150418200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr1:150393400-150429800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:150393600-150418800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:150393600-150420600	Weak transcription	Brain Angular Gyrus	brain
25	chr1:150393600-150429800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr1:150393800-150429800	Weak transcription	NHEK	skin
27	chr1:150395800-150419000	Weak transcription	Spleen	Spleen
28	chr1:150397000-150419000	Weak transcription	Esophagus	oesophagus
29	chr1:150401400-150448200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr1:150405200-150422400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr1:150405400-150418400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:150406800-150418800	Weak transcription	HSMMtube	muscle
33	chr1:150407800-150418600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr1:150408400-150425000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr1:150409600-150427200	Weak transcription	Small Intestine	intestine
36	chr1:150409800-150437000	Strong transcription	Fetal Thymus	thymus
37	chr1:150410000-150429800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr1:150410800-150434400	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr1:150411000-150429800	Weak transcription	HUVEC	blood vessel
40	chr1:150411200-150446400	Strong transcription	Dnd41	blood
41	chr1:150411600-150422800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr1:150412000-150443000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr1:150412600-150428200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:150412800-150417400	Weak transcription	Fetal Intestine Small	intestine
45	chr1:150412800-150417400	Weak transcription	Fetal Stomach	stomach
46	chr1:150412800-150422200	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr1:150413000-150421000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr1:150413200-150422800	Strong transcription	Hela-S3	cervix
49	chr1:150413400-150422400	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr1:150413400-150422600	Strong transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links