Variant report

Variant	rs35094010
Chromosome Location	chr1:150449557-150449558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150438878..150440881-chr1:150449500..150452066,3	K562	blood:
2	chr1:150439942..150442505-chr1:150446832..150450419,3	MCF-7	breast:
3	chr1:150447560..150450258-chr1:150589429..150592366,2	MCF-7	breast:
4	chr1:150449469..150451134-chr1:150459771..150462090,2	K562	blood:
5	chr1:150449166..150451337-chr1:150534511..150537297,2	MCF-7	breast:
6	chr1:150447687..150449765-chr1:150457686..150459681,3	MCF-7	breast:
7	chr1:150449439..150451235-chr1:150456085..150459003,2	MCF-7	breast:
8	chr1:150449030..150453503-chr1:150523605..150527315,4	K562	blood:
9	chr1:150447035..150450555-chr1:150451987..150453811,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000143382	Chromatin interaction
ENSG00000264553	Chromatin interaction
ENSG00000143374	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11799813	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11800656	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11801190	1.00[ASN][1000 genomes]
rs11801255	0.94[EUR][1000 genomes]
rs11802612	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11803448	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11806171	1.00[ASN][1000 genomes]
rs11807119	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11809332	1.00[ASN][1000 genomes]
rs12718416	0.95[EUR][1000 genomes]
rs12723364	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12724450	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12729727	1.00[ASN][1000 genomes]
rs12730265	1.00[ASN][1000 genomes]
rs12735903	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12736584	1.00[ASN][1000 genomes]
rs12743761	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12745672	1.00[ASN][1000 genomes]
rs12749958	1.00[ASN][1000 genomes]
rs12756583	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12759551	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28495360	1.00[ASN][1000 genomes]
rs34001546	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34233130	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34307322	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34347495	1.00[ASN][1000 genomes]
rs34448981	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34514406	1.00[ASN][1000 genomes]
rs34542152	1.00[ASN][1000 genomes]
rs34609268	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34629240	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34696422	0.87[EUR][1000 genomes]
rs34964511	1.00[ASN][1000 genomes]
rs35347210	1.00[ASN][1000 genomes]
rs35437473	1.00[ASN][1000 genomes]
rs35762205	1.00[ASN][1000 genomes]
rs35839143	1.00[ASN][1000 genomes]
rs35935423	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4845	1.00[ASN][1000 genomes]
rs56214117	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57323357	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58427317	1.00[ASN][1000 genomes]
rs58853199	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71515775	1.00[ASN][1000 genomes]
rs71622688	1.00[ASN][1000 genomes]
rs71622689	1.00[ASN][1000 genomes]
rs71622694	1.00[ASN][1000 genomes]
rs71622695	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622696	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622697	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71622698	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622702	1.00[ASN][1000 genomes]
rs74124663	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74124686	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517003	1.00[ASN][1000 genomes]
rs7535275	1.00[ASN][1000 genomes]
rs7546610	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
2	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150444800-150459000	Weak transcription	GM12878-XiMat	blood
2	chr1:150445000-150452800	Enhancers	HepG2	liver
3	chr1:150445000-150459400	Weak transcription	Fetal Brain Male	brain
4	chr1:150445200-150449600	Weak transcription	NH-A	brain
5	chr1:150445200-150450600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:150445400-150449600	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:150445400-150449800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr1:150445400-150449800	Weak transcription	HUVEC	blood vessel
9	chr1:150445400-150450400	Weak transcription	Fetal Kidney	kidney
10	chr1:150445400-150450400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:150445400-150459400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:150445600-150449800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:150445600-150449800	Weak transcription	Lung	lung
14	chr1:150445600-150449800	Weak transcription	Stomach Mucosa	stomach
15	chr1:150445600-150449800	Weak transcription	A549	lung
16	chr1:150445600-150450000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:150445600-150450800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:150445600-150450800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr1:150445800-150449600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr1:150445800-150449800	Weak transcription	Colonic Mucosa	Colon
21	chr1:150445800-150449800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr1:150445800-150449800	Weak transcription	Placenta	Placenta
23	chr1:150445800-150449800	Weak transcription	Gastric	stomach
24	chr1:150445800-150449800	Weak transcription	Right Ventricle	heart
25	chr1:150445800-150450200	Weak transcription	Fetal Lung	lung
26	chr1:150445800-150450200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr1:150445800-150450400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr1:150445800-150451600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr1:150445800-150459400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr1:150445800-150459400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr1:150445800-150459600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:150446000-150449600	Weak transcription	Spleen	Spleen
33	chr1:150446000-150450200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:150446000-150451000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr1:150446000-150453600	Weak transcription	Brain Germinal Matrix	brain
36	chr1:150446000-150457200	Weak transcription	Hela-S3	cervix
37	chr1:150446200-150452000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr1:150446200-150459000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr1:150446400-150449600	Weak transcription	Fetal Stomach	stomach
40	chr1:150446400-150449600	Weak transcription	NHLF	lung
41	chr1:150446400-150449800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr1:150446400-150449800	Weak transcription	Fetal Intestine Small	intestine
43	chr1:150446400-150449800	Weak transcription	Pancreas	Pancrea
44	chr1:150446400-150449800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr1:150446400-150450200	Weak transcription	Fetal Intestine Large	intestine
46	chr1:150446400-150456000	Weak transcription	Brain Angular Gyrus	brain
47	chr1:150446400-150457200	Weak transcription	Esophagus	oesophagus
48	chr1:150446400-150459000	Weak transcription	Primary B cells from peripheral blood	blood
49	chr1:150446400-150459200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr1:150446400-150459400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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