Variant report

Variant	rs1281244
Chromosome Location	chr6:129050850-129050851
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65266501..65269058-chr6:129049699..129051446,2	MCF-7	breast:
2	chr6:128839207..128843653-chr6:129048714..129054642,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152894	Chromatin interaction
ENSG00000251562	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1082316	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1281243	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1281247	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1508448	0.88[EUR][1000 genomes]
rs1949003	0.88[EUR][1000 genomes]
rs60999252	1.00[ASN][1000 genomes]
rs6569556	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs774277	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs774281	0.90[EUR][1000 genomes]
rs774283	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs774289	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746855	0.86[EUR][1000 genomes]
rs7764078	0.88[EUR][1000 genomes]
rs7764948	0.88[EUR][1000 genomes]
rs9321131	0.87[EUR][1000 genomes]
rs9321132	0.87[EUR][1000 genomes]
rs9321133	0.88[EUR][1000 genomes]
rs9385471	0.87[EUR][1000 genomes]
rs9388665	0.88[EUR][1000 genomes]
rs9482916	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482917	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs9482919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs9482920	0.88[EUR][1000 genomes]
rs9492055	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492056	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs9492057	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs9492065	1.00[CHB][hapmap]
rs9492066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs9492067	0.84[EUR][1000 genomes]
rs9492068	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs9492069	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs9492071	0.90[EUR][1000 genomes]
rs9492072	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830801	chr6:128878436-129064667	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129045200-129062000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:129046600-129058000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:129046800-129058000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:129047200-129052600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:129047200-129052600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:129047200-129052600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:129047200-129055600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:129047200-129056000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:129047200-129056200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:129050400-129052600	Weak transcription	Ovary	ovary

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