Variant report

Variant	rs774289
Chromosome Location	chr6:129046732-129046733
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128975771..128978222-chr6:129045702..129048467,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1082316	0.84[EUR][1000 genomes]
rs1281243	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1281244	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1281247	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1508448	0.83[EUR][1000 genomes]
rs1949003	0.83[EUR][1000 genomes]
rs60999252	1.00[ASN][1000 genomes]
rs6569556	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs774277	0.84[EUR][1000 genomes]
rs774281	0.85[EUR][1000 genomes]
rs774283	1.00[CHB][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs7746855	0.81[EUR][1000 genomes]
rs7764078	0.83[EUR][1000 genomes]
rs7764948	0.83[EUR][1000 genomes]
rs9321131	0.82[EUR][1000 genomes]
rs9321132	0.82[EUR][1000 genomes]
rs9321133	0.83[EUR][1000 genomes]
rs9385471	0.82[EUR][1000 genomes]
rs9388665	0.83[EUR][1000 genomes]
rs9482916	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482917	1.00[CHB][hapmap]
rs9482919	0.83[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs9482920	0.83[EUR][1000 genomes]
rs9492055	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492056	1.00[CHB][hapmap]
rs9492057	1.00[CHB][hapmap]
rs9492065	1.00[CHB][hapmap]
rs9492066	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs9492068	1.00[CHB][hapmap]
rs9492069	1.00[CHB][hapmap]
rs9492071	0.85[EUR][1000 genomes]
rs9492072	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv830801	chr6:128878436-129064667	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129040800-129047200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:129041000-129047200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:129044000-129046800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:129044800-129046800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:129045200-129047200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:129045200-129047200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:129045200-129047200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:129045200-129062000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:129045400-129047200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:129045800-129047000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:129046600-129058000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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