Variant report

Variant rs12982980
Chromosome Location chr19:53349850-53349851
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:53338800-53352000 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
2 chr19:53338800-53355000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr19:53339000-53357600 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr19:53339000-53357800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
5 chr19:53339000-53359200 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
6 chr19:53339200-53350600 ZNF genes & repeats Rectal Mucosa Donor 29 rectum
7 chr19:53339600-53351600 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
8 chr19:53340400-53350200 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr19:53340600-53350200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr19:53340600-53355000 ZNF genes & repeats Duodenum Mucosa Duodenum
11 chr19:53340800-53350400 Strong transcription Dnd41 blood
12 chr19:53340800-53352000 Strong transcription Fetal Brain Female brain
13 chr19:53340800-53355000 ZNF genes & repeats Primary hematopoietic stem cells blood
14 chr19:53340800-53355000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr19:53340800-53357400 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
16 chr19:53340800-53357800 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
17 chr19:53341200-53352000 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
18 chr19:53341200-53353800 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr19:53341400-53352200 ZNF genes & repeats Primary B cells from cord blood blood
20 chr19:53342000-53350400 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
21 chr19:53342000-53352400 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
22 chr19:53342000-53353000 ZNF genes & repeats Primary T cells from cord blood blood
23 chr19:53342200-53351400 ZNF genes & repeats Aorta Aorta
24 chr19:53342200-53353200 ZNF genes & repeats Primary T helper naive cells fromperipheralblood blood
25 chr19:53342200-53355000 ZNF genes & repeats Primary T helper 17 cells PMA-I stimulated --
26 chr19:53342200-53357600 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr19:53342400-53350800 ZNF genes & repeats Primary Natural Killer cells fromperipheralblood blood
28 chr19:53342400-53353000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr19:53342400-53357800 ZNF genes & repeats Liver Liver
30 chr19:53342600-53351600 ZNF genes & repeats Primary T killer naive cells fromperipheralblood blood
31 chr19:53342800-53350000 ZNF genes & repeats Primary B cells from peripheral blood blood
32 chr19:53343000-53350200 ZNF genes & repeats Spleen Spleen
33 chr19:53343200-53350400 ZNF genes & repeats Primary neutrophils fromperipheralblood blood
34 chr19:53343200-53359200 ZNF genes & repeats Primary monocytes fromperipheralblood blood
35 chr19:53343600-53350600 ZNF genes & repeats Primary mononuclear cells fromperipheralblood Blood
36 chr19:53344000-53352000 ZNF genes & repeats Primary T cells fromperipheralblood blood
37 chr19:53344000-53358000 ZNF genes & repeats Lung lung
38 chr19:53344600-53350000 ZNF genes & repeats Esophagus oesophagus
39 chr19:53344600-53351200 ZNF genes & repeats Pancreas Pancrea
40 chr19:53344600-53352000 ZNF genes & repeats Fetal Intestine Large intestine
41 chr19:53345000-53350400 ZNF genes & repeats Fetal Intestine Small intestine
42 chr19:53345000-53352800 Strong transcription Brain Hippocampus Middle brain
43 chr19:53345400-53350200 Strong transcription K562 blood
44 chr19:53345400-53350400 Strong transcription Cortex derived primary cultured neurospheres brain
45 chr19:53345400-53350600 Strong transcription Right Ventricle heart
46 chr19:53345400-53352600 Strong transcription Skeletal Muscle Male skeletal muscle
47 chr19:53345400-53360200 Weak transcription Fetal Heart heart
48 chr19:53345400-53360200 Weak transcription Hela-S3 cervix
49 chr19:53345800-53360400 Weak transcription ES-WA7 Cell Line embryonic stem cell
50 chr19:53346000-53352000 Strong transcription Brain Substantia Nigra brain

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