Variant report

Variant	rs13059037
Chromosome Location	chr3:48287879-48287880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:48281489..48285541-chr3:48286878..48291166,4	MCF-7	breast:
2	chr3:48281256..48284986-chr3:48287770..48291151,3	K562	blood:

Variant related genes	Relation type
ENSG00000164048	Chromatin interaction

Extended variants
information (count: 157 )
Associated
traits (count: 51 )

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs1045482	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs11130162	0.85[EUR][1000 genomes]
rs11130163	0.85[EUR][1000 genomes]
rs11130164	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1134867	0.80[EUR][1000 genomes]
rs11706221	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11706277	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11707606	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11707997	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11709691	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11710257	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11710861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11713476	0.80[EUR][1000 genomes]
rs11714176	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11714944	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11715776	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11715799	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11715876	0.84[EUR][1000 genomes]
rs11716371	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11716848	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11717716	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11718329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11718350	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11719365	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12486935	0.92[JPT][hapmap];1.00[YRI][hapmap]
rs12486944	0.91[JPT][hapmap]
rs13060020	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13061269	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13066044	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13066758	0.90[CEU][hapmap];0.89[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13067450	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13068265	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13068288	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13069029	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13070210	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13071960	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13072018	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13079728	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13081169	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13081633	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13082158	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13082859	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13084616	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13085251	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13087050	0.83[JPT][hapmap];0.85[MKK][hapmap]
rs13087929	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13090538	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13094727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13095983	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13097450	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13100815	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17647717	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17786132	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2125482	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2361685	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2541	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3197223	1.00[ASW][hapmap];0.96[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34076262	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34225441	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34523942	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34589064	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34630841	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34728236	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34749846	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34946886	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35190747	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35297395	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35297486	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35411187	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35414021	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35456569	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35778847	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35802497	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35944878	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36020562	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36064160	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36075665	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36092070	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36121690	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3729577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3731487	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3731489	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3731497	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3731513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3731515	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3731534	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3731550	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3731555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4130522	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4131361	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4131362	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4371540	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4392440	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4404473	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4420898	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4479622	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4511915	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4511916	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4541431	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4619808	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4632568	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6442110	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs6442111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6775179	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6782166	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6787500	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs6791930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6793150	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6793223	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6793239	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6794644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6796343	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796490	0.88[CEU][hapmap]
rs6800492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6801801	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6804986	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6806112	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs71323391	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71323394	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71323395	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71323396	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71323397	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs745116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7614532	0.95[EUR][1000 genomes]
rs7621785	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7624450	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7632297	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7636461	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7644414	0.86[EUR][1000 genomes]
rs7645425	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7647817	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7648720	0.97[EUR][1000 genomes]
rs7652233	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7653152	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7653336	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9311421	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs936426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs936427	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9818937	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9819094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9825637	0.96[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9830016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831531	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9833309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9834095	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9837228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9847953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9850672	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9853804	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9862131	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529989	chr3:47909480-48301481	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1009243	chr3:47935331-48340448	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv536562	chr3:47935331-48340448	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv1002067	chr3:47996472-48326518	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv834682	chr3:48138137-48311122	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:51)

SNP	Gene	Cis/trans	Tissue	Source
rs13059037	PLXNB1	cis	parietal	SCAN
rs13059037	ZNF589	cis	Brain Pons	GTEx
rs13059037	NME6	cis	Artery Tibial	GTEx
rs13059037	NME6	cis	lymphoblastoid	seeQTL
rs13059037	MRPS18AP1	cis	Skin Sun Exposed Lower leg	GTEx
rs13059037	MRPS18AP1	cis	Esophagus Muscularis	GTEx
rs13059037	AMT	cis	parietal	SCAN
rs13059037	CDC25A	cis	Adipose Subcutaneous	GTEx
rs13059037	NME6	cis	multi-tissue	Pritchard
rs13059037	ZNF589	cis	Thyroid	GTEx
rs13059037	ZNF589	cis	Artery Tibial	GTEx
rs13059037	MRPS18AP1	cis	Adipose Subcutaneous	GTEx
rs13059037	SPINK8	cis	Whole Blood	GTEx
rs13059037	ZNF589	cis	cerebellum	SCAN
rs13059037	ZNF589	cis	Skin Sun Exposed Lower leg	GTEx
rs13059037	IQCF2	cis	parietal	SCAN
rs13059037	NME6	cis	Esophagus Muscularis	GTEx
rs13059037	MRPS18AP1	cis	Artery Aorta	GTEx
rs13059037	ZNF589	cis	Esophagus Mucosa	GTEx
rs13059037	MRPS18AP1	cis	Heart Left Ventricle	GTEx
rs13059037	ZNF589	cis	lung	GTEx
rs13059037	ZNF589	cis	Artery Aorta	GTEx
rs13059037	DALRD3	cis	cerebellum	SCAN
rs13059037	MRPS18AP1	cis	Stomach	GTEx
rs13059037	RBM5	cis	cerebellum	SCAN
rs13059037	MRPS18AP1	cis	Esophagus Mucosa	GTEx
rs13059037	NME6	cis	Nerve Tibial	GTEx
rs13059037	NME6	Cis_1M	lymphoblastoid	RTeQTL
rs13059037	MAP4	Cis_1M	lymphoblastoid	RTeQTL
rs13059037	CDC25A	cis	Muscle Skeletal	GTEx
rs13059037	NME6	cis	cerebellum	SCAN
rs13059037	NME6	cis	Muscle Skeletal	GTEx
rs13059037	MRPS18AP1	cis	Artery Tibial	GTEx
rs13059037	CDC25A	cis	Thyroid	GTEx
rs13059037	ZNF589	cis	Stomach	GTEx
rs13059037	MRPS18AP1	cis	lung	GTEx
rs13059037	ARIH2	cis	parietal	SCAN
rs13059037	ZNF589	cis	parietal	SCAN
rs13059037	FCF1P2	cis	Artery Tibial	GTEx
rs13059037	NME6	cis	Skin Sun Exposed Lower leg	GTEx
rs13059037	CDC25A	cis	cerebellum	SCAN
rs13059037	MRPS18AP1	cis	Nerve Tibial	GTEx
rs13059037	ZNF589	cis	Esophagus Muscularis	GTEx
rs13059037	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs13059037	MRPS18AP1	cis	Thyroid	GTEx
rs13059037	ZNF589	cis	Adipose Subcutaneous	GTEx
rs13059037	ZNF589	cis	Cerebellum	GTEx
rs13059037	ZNF589	cis	Nerve Tibial	GTEx
rs13059037	XCR1	cis	parietal	SCAN
rs13059037	ZNF589	Cis_1M	lymphoblastoid	RTeQTL
rs13059037	CDC25A	cis	Artery Tibial	GTEx

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48283200-48309800	Weak transcription	Fetal Lung	lung
2	chr3:48283400-48288800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:48283400-48289000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:48283400-48295200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:48283400-48297600	Weak transcription	Right Ventricle	heart
6	chr3:48283400-48300400	Weak transcription	Gastric	stomach
7	chr3:48283400-48310000	Weak transcription	NH-A	brain
8	chr3:48283400-48315200	Weak transcription	Ovary	ovary
9	chr3:48283600-48288400	Weak transcription	HUVEC	blood vessel
10	chr3:48283600-48288600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:48283600-48288800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:48283600-48288800	Weak transcription	HMEC	breast
13	chr3:48283600-48288800	Weak transcription	NHDF-Ad	bronchial
14	chr3:48283600-48289000	Weak transcription	HepG2	liver
15	chr3:48283600-48289800	Weak transcription	Liver	Liver
16	chr3:48283600-48290800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:48283600-48291200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:48283600-48297800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr3:48283600-48300200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr3:48283600-48300800	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:48283600-48309600	Weak transcription	Fetal Intestine Large	intestine
22	chr3:48283800-48288400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:48283800-48288600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr3:48283800-48288600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:48283800-48288800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:48283800-48288800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:48283800-48288800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr3:48283800-48288800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr3:48283800-48289600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr3:48283800-48289800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:48283800-48289800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:48283800-48290000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr3:48283800-48290000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr3:48283800-48297600	Weak transcription	Esophagus	oesophagus
35	chr3:48283800-48307600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:48283800-48309400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:48283800-48310400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr3:48284000-48288800	Weak transcription	Brain Angular Gyrus	brain
39	chr3:48284000-48288800	Weak transcription	Brain Hippocampus Middle	brain
40	chr3:48284000-48289600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr3:48284000-48289600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr3:48284000-48292600	Weak transcription	Colonic Mucosa	Colon
43	chr3:48284200-48288400	Weak transcription	Primary T cells from cord blood	blood
44	chr3:48284200-48289000	Weak transcription	Primary B cells from cord blood	blood
45	chr3:48284200-48297600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr3:48284200-48302800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr3:48284800-48289600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr3:48285000-48289600	Weak transcription	Fetal Thymus	thymus
49	chr3:48285000-48290800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr3:48285000-48292400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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