Variant report

Variant	rs2541
Chromosome Location	chr3:48339618-48339619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:48319008..48321594-chr3:48336841..48339806,2	K562	blood:
2	chr3:48337601..48339760-chr3:48751795..48754460,2	MCF-7	breast:
3	chr3:48335073..48340448-chr3:48341483..48344077,7	K562	blood:
4	chr3:48328476..48331026-chr3:48338311..48340193,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000199476	Chromatin interaction
ENSG00000172113	Chromatin interaction
ENSG00000068745	Chromatin interaction

Extended variants
information (count: 157 )
Associated
traits (count: 37 )

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs1045482	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs11130162	0.83[EUR][1000 genomes]
rs11130163	0.83[EUR][1000 genomes]
rs11130164	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1134867	0.84[EUR][1000 genomes]
rs11706221	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11707606	0.84[EUR][1000 genomes]
rs11707997	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709691	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11710257	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710861	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes]
rs11713476	0.85[EUR][1000 genomes]
rs11714176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714944	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715776	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715799	0.92[EUR][1000 genomes]
rs11715876	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11716371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716848	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717716	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11718329	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes]
rs11718350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719365	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11928691	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12486935	1.00[JPT][hapmap]
rs12486944	1.00[JPT][hapmap]
rs13059037	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13060020	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066044	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066758	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13067450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068265	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13068288	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13069029	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070210	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071960	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072018	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13079728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13081169	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13081633	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082158	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13084616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13087050	0.92[JPT][hapmap];1.00[YRI][hapmap]
rs13087929	0.84[EUR][1000 genomes]
rs13090538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13094727	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13095983	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097450	0.94[EUR][1000 genomes]
rs13100815	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17647717	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17786132	0.89[EUR][1000 genomes]
rs2125482	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2361685	0.84[EUR][1000 genomes]
rs3197223	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34076262	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34225441	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34523942	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34589064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34630841	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34728236	0.93[EUR][1000 genomes]
rs34749846	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34946886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35190747	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35297395	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35297486	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35411187	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35414021	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35456569	0.89[EUR][1000 genomes]
rs35778847	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35802497	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35944878	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36020562	0.92[EUR][1000 genomes]
rs36064160	0.84[EUR][1000 genomes]
rs36075665	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36092070	0.97[EUR][1000 genomes]
rs36121690	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3729577	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs3731487	0.84[EUR][1000 genomes]
rs3731489	0.84[EUR][1000 genomes]
rs3731497	0.84[EUR][1000 genomes]
rs3731513	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs3731515	0.84[EUR][1000 genomes]
rs3731534	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs3731550	0.83[EUR][1000 genomes]
rs3731555	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes]
rs3937	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4130522	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4130995	0.83[EUR][1000 genomes]
rs4131361	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4131362	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4371540	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4392440	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4404473	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4420898	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4479622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4511915	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4511916	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4541431	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4619808	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4632568	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6442110	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs6442111	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6775179	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6782166	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6787500	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs6791930	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6793150	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793223	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793239	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794644	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6796343	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6796490	0.83[CEU][hapmap]
rs6800492	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6801801	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6804986	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806112	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs71323391	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71323394	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71323395	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71323396	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71323397	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs745116	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes]
rs7614532	0.96[EUR][1000 genomes]
rs7619865	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs7621785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624450	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632297	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636461	0.94[EUR][1000 genomes]
rs7644414	0.84[EUR][1000 genomes]
rs7645425	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647817	0.84[EUR][1000 genomes]
rs7648720	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7652233	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653152	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653336	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311421	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs936426	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs936427	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9818937	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9819094	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9825637	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830016	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9831531	0.84[EUR][1000 genomes]
rs9833309	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9834095	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9837228	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9846818	0.81[EUR][1000 genomes]
rs9847953	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9850672	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes]
rs9853804	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009243	chr3:47935331-48340448	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv536562	chr3:47935331-48340448	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv834683	chr3:48301504-48493261	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

mRNA abundance (count:37)

SNP	Gene	Cis/trans	Tissue	Source
rs2541	NME6	cis	Muscle Skeletal	GTEx
rs2541	MRPS18AP1	cis	lung	GTEx
rs2541	ZNF589	cis	Artery Tibial	GTEx
rs2541	CDC25A	cis	Artery Tibial	GTEx
rs2541	MRPS18AP1	cis	Heart Left Ventricle	GTEx
rs2541	SPINK8	cis	Whole Blood	GTEx
rs2541	MRPS18AP1	cis	Artery Aorta	GTEx
rs2541	ZNF589	cis	Stomach	GTEx
rs2541	CDC25A	cis	Thyroid	GTEx
rs2541	NME6	cis	multi-tissue	Pritchard
rs2541	MRPS18AP1	cis	Stomach	GTEx
rs2541	ZNF589	cis	Adipose Subcutaneous	GTEx
rs2541	ZNF589	cis	Esophagus Muscularis	GTEx
rs2541	MRPS18AP1	cis	Nerve Tibial	GTEx
rs2541	ZNF589	Cis_1M	lymphoblastoid	RTeQTL
rs2541	ZNF589	cis	lung	GTEx
rs2541	ZNF589	cis	Artery Aorta	GTEx
rs2541	ZNF589	cis	Thyroid	GTEx
rs2541	MRPS18AP1	cis	Esophagus Mucosa	GTEx
rs2541	NME6	cis	Esophagus Muscularis	GTEx
rs2541	NME6	Cis_1M	lymphoblastoid	RTeQTL
rs2541	MRPS18AP1	cis	Thyroid	GTEx
rs2541	CDC25A	cis	Muscle Skeletal	GTEx
rs2541	CDC25A	cis	Adipose Subcutaneous	GTEx
rs2541	ZNF589	cis	Nerve Tibial	GTEx
rs2541	NME6	cis	Artery Tibial	GTEx
rs2541	MRPS18AP1	cis	Esophagus Muscularis	GTEx
rs2541	MRPS18AP1	cis	Artery Tibial	GTEx
rs2541	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs2541	ZNF589	cis	Skin Sun Exposed Lower leg	GTEx
rs2541	MRPS18AP1	cis	Skin Sun Exposed Lower leg	GTEx
rs2541	MAP4	Cis_1M	lymphoblastoid	RTeQTL
rs2541	NME6	cis	Nerve Tibial	GTEx
rs2541	NME6	cis	Skin Sun Exposed Lower leg	GTEx
rs2541	MRPS18AP1	cis	Adipose Subcutaneous	GTEx
rs2541	FCF1P2	cis	Artery Tibial	GTEx
rs2541	ZNF589	cis	Esophagus Mucosa	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48329200-48341400	Weak transcription	Small Intestine	intestine
2	chr3:48330200-48340000	Strong transcription	Stomach Smooth Muscle	stomach
3	chr3:48330400-48340200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr3:48330800-48340200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:48331600-48341200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:48332000-48340400	Strong transcription	Primary B cells from cord blood	blood
7	chr3:48332200-48340000	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr3:48332400-48340000	Strong transcription	Fetal Lung	lung
9	chr3:48332400-48340200	Strong transcription	Primary T cells from cord blood	blood
10	chr3:48332400-48340200	Strong transcription	Duodenum Mucosa	Duodenum
11	chr3:48332400-48340800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:48332600-48340200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:48333400-48340000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:48333400-48340400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:48333600-48339800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:48333600-48340000	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:48333600-48340000	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr3:48333600-48340000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:48333600-48340200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:48333600-48340200	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr3:48333600-48340200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:48333600-48340200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:48333600-48340600	Strong transcription	Fetal Brain Female	brain
24	chr3:48333800-48340000	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr3:48333800-48340000	Strong transcription	Brain Hippocampus Middle	brain
26	chr3:48333800-48340200	Strong transcription	Fetal Thymus	thymus
27	chr3:48333800-48340400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:48333800-48340600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:48334000-48340200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr3:48334000-48340200	Strong transcription	Fetal Stomach	stomach
31	chr3:48334000-48340400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:48334000-48340400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr3:48334200-48339800	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr3:48334200-48339800	Strong transcription	Liver	Liver
35	chr3:48334200-48340000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:48334200-48340000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:48334200-48340000	Strong transcription	Thymus	Thymus
38	chr3:48334200-48340200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:48334200-48340200	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr3:48334200-48340200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:48334200-48340200	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr3:48334200-48340200	Strong transcription	Fetal Muscle Trunk	muscle
43	chr3:48334200-48340200	Strong transcription	Ovary	ovary
44	chr3:48334200-48340400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr3:48334200-48340800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr3:48334400-48339800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr3:48334400-48339800	Strong transcription	Right Ventricle	heart
48	chr3:48334400-48339800	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:48334400-48339800	Strong transcription	NH-A	brain
50	chr3:48334400-48340000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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