Variant report

Variant	rs34523942
Chromosome Location	chr3:48342669-48342670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:318)
CpG islands
(count:61)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:318 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr3:48342472-48343340	GM12878	blood:	n/a	chr3:48342982-48342991
2	POLR2A	chr3:48341816-48344787	Raji	blood:	n/a	n/a
3	POLR2A	chr3:48342391-48343691	MCF-7	breast:	n/a	n/a
4	BHLHE40	chr3:48342546-48343712	GM12878	blood:	n/a	chr3:48342640-48342656
5	POLR2A	chr3:48342366-48343522	GM12878	blood:	n/a	n/a
6	POLR2A	chr3:48342545-48343231	A549	lung:	n/a	n/a
7	SRF	chr3:48342554-48343352	MCF-7	breast:	n/a	n/a
8	TAF1	chr3:48342351-48343286	H1-neurons	neurons:	n/a	n/a
9	ATF2	chr3:48342385-48343201	GM12878	blood:	n/a	n/a
10	POLR2A	chr3:48342440-48343353	K562	blood:	n/a	n/a
11	MAX	chr3:48342505-48343682	H1-hESC	embryonic stem cell:	n/a	chr3:48342982-48342991
12	MAX	chr3:48341780-48343638	NB4	blood:	n/a	chr3:48342982-48342991
13	MAZ	chr3:48342622-48343556	Hela-S3	cervix:	n/a	chr3:48342982-48342991
14	CREB1	chr3:48342520-48343311	H1-hESC	embryonic stem cell:	n/a	n/a
15	SIN3AK20	chr3:48342539-48343345	PANC-1	pancreas:	n/a	n/a
16	JUN	chr3:48342382-48343697	K562	blood:	n/a	n/a
17	POLR2A	chr3:48341465-48343731	K562	blood:	n/a	n/a
18	NFIC	chr3:48341637-48343830	GM12878	blood:	n/a	chr3:48343461-48343478 chr3:48343461-48343477
19	HEY1	chr3:48342481-48343300	HepG2	liver:	n/a	chr3:48342738-48342753
20	MYC	chr3:48342490-48343283	MCF-7	breast:	n/a	chr3:48342982-48342991
21	KAP1	chr3:48342543-48343419	HEK293	kidney:	n/a	chr3:48343249-48343257
22	MAX	chr3:48341832-48343643	K562	blood:	n/a	chr3:48342982-48342991
23	SIN3A	chr3:48342553-48343359	GM12878	blood:	n/a	chr3:48343153-48343162
24	POLR2A	chr3:48341101-48344338	GM12878	blood:	n/a	n/a
25	MAX	chr3:48342507-48343340	H1-hESC	embryonic stem cell:	n/a	chr3:48342982-48342991
26	GATA3	chr3:48342477-48343327	A549	lung:	n/a	n/a
27	CREB1	chr3:48342481-48343726	GM12878	blood:	n/a	n/a
28	BACH1	chr3:48342501-48343162	H1-hESC	embryonic stem cell:	n/a	n/a
29	ELK1	chr3:48342529-48343216	GM12878	blood:	n/a	n/a
30	HMGN3	chr3:48342521-48343279	K562	blood:	n/a	n/a
31	POLR2A	chr3:48342447-48343637	HepG2	liver:	n/a	n/a
32	ZEB1	chr3:48342539-48343664	GM12878	blood:	n/a	chr3:48343472-48343483
33	POLR2A	chr3:48342384-48343720	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr3:48342432-48343549	IMR90	lung:	n/a	n/a
35	POLR2A	chr3:48342442-48343430	Gliobla	brain:	n/a	n/a
36	CTCF	chr3:48342520-48342670	HUVEC	blood vessel:	n/a	n/a
37	POLR2A	chr3:48342350-48343479	MCF-7	breast:	n/a	n/a
38	POLR2A	chr3:48342229-48343689	SK-N-MC	brain:	n/a	n/a
39	RELA	chr3:48342521-48343555	GM12892	blood:	n/a	chr3:48342999-48343008 chr3:48342999-48343008
40	E2F6	chr3:48342526-48343702	Hela-S3	cervix:	n/a	n/a
41	POLR2A	chr3:48342619-48343241	SK-N-MC	brain:	n/a	n/a
42	POLR2A	chr3:48342437-48343617	GM12878	blood:	n/a	n/a
43	UBTF	chr3:48342533-48343453	K562	blood:	n/a	n/a
44	SIN3AK20	chr3:48342526-48343814	MCF-7	breast:	n/a	n/a
45	ELF1	chr3:48342361-48343594	GM12878	blood:	n/a	n/a
46	CHD2	chr3:48342537-48343690	Hela-S3	cervix:	n/a	n/a
47	POLR2A	chr3:48342411-48343276	K562	blood:	n/a	n/a
48	EGR1	chr3:48342333-48343131	ECC-1	luminal epithelium:	n/a	chr3:48342632-48342645 chr3:48342633-48342643 chr3:48342631-48342645 chr3:48342633-48342643 chr3:48342633-48342642 chr3:48342632-48342645 chr3:48342632-48342645
49	RELA	chr3:48342635-48343541	GM19193	blood:	n/a	chr3:48342999-48343008 chr3:48342999-48343008
50	ZBTB7A	chr3:48342486-48343138	ECC-1	luminal epithelium:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:48342648-48342698	Jurkat	blood:	n/a
2	chr3:48342648-48342698	SKMC	muscle:	n/a
3	chr3:48342648-48342698	NT2-D1	testis:	n/a
4	chr3:48342648-48342698	HRE	kidney:	n/a
5	chr3:48342648-48342698	AG10803	skin:	n/a
6	chr3:48342648-48342698	HAEpiC	amniotic membrane:	n/a
7	chr3:48342648-48342698	NH-A	brain:	n/a
8	chr3:48342648-48342698	NB4	blood:	n/a
9	chr3:48342648-48342698	H1-hESC	embryonic stem cell:	embryo
10	chr3:48342648-48342698	SK-N-MC	brain:	n/a
11	chr3:48342648-48342698	PrEC	prostate:	n/a
12	chr3:48342648-48342698	GM12878	blood:	n/a
13	chr3:48342648-48342698	HMEC	breast:	n/a
14	chr3:48342648-48342698	SK-N-SH_RA	brain:	n/a
15	chr3:48342648-48342698	HUVEC	blood vessel:	n/a
16	chr3:48342648-48342698	HEK293	kidney:	embryo
17	chr3:48342648-48342698	SK-N-SH	brain:	n/a
18	chr3:48342648-48342698	GM12891	blood:	n/a
19	chr3:48342648-48342698	GM06990	blood:	n/a
20	chr3:48342648-48342698	SAEC	small airway:	n/a
21	chr3:48342648-48342698	RPTEC	kidney:	n/a
22	chr3:48342648-48342698	NHBE	bronchial:	n/a
23	chr3:48342648-48342698	IMR90	lung:	fetal
24	chr3:48342648-48342698	Caco-2	colon:	n/a
25	chr3:48342648-48342698	HCPEpiC	choroid plexus:	n/a
26	chr3:48342648-48342698	MCF10A-Er-Src	breast:	n/a
27	chr3:48342648-48342698	MCF-7	breast:	n/a
28	chr3:48342648-48342698	Hela-S3	cervix:	n/a
29	chr3:48342648-48342698	HEEpiC	esophagus:	n/a
30	chr3:48342648-48342698	HNPCEpiC	eye:	n/a
31	chr3:48342648-48342698	K562	blood:	n/a
32	chr3:48342648-48342698	HRPEpiC	eye:	n/a
33	chr3:48342648-48342698	HCT-116	colon:	n/a
34	chr3:48342648-48342698	HL-60	blood:	n/a
35	chr3:48342648-48342698	PANC-1	pancreas:	n/a
36	chr3:48342648-48342698	AG09319	gingival:	n/a
37	chr3:48342648-48342698	HPAEpiC	pulmonary alveolar:	n/a
38	chr3:48342648-48342698	BJ	skin:	n/a
39	chr3:48342648-48342698	GM12892	blood:	n/a
40	chr3:48342648-48342698	T-47D	breast:	n/a
41	chr3:48342648-48342698	NHDF-neo	bronchial:	n/a
42	chr3:48342648-48342698	Hepatocyte	liver:	n/a
43	chr3:48342648-48342698	CMK	blood:	n/a
44	chr3:48342648-48342698	PFSK-1	brain:	n/a
45	chr3:48342648-48342698	ECC-1	luminal epithelium:	n/a
46	chr3:48342648-48342698	AoSMC	blood vessel:	n/a
47	chr3:48342648-48342698	HRCEpiC	kidney:	n/a
48	chr3:48342648-48342698	AG04449	skin:	fetal
49	chr3:48342648-48342698	ProgFib	skin:	n/a
50	chr3:48342648-48342698	HCM	heart:	n/a

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:43010954..43011772-chr3:48342565..48343160,2	Hela-S3	cervix:
2	chr3:48342633..48343492-chr5:118604190..118604719,2	HCT-116	colon:
3	chr3:48341906..48343941-chr5:172755469..172757173,2	MCF-7	breast:
4	chr3:48341722..48343644-chr3:48355506..48358531,3	MCF-7	breast:
5	chr3:48263694..48265723-chr3:48340681..48342863,2	MCF-7	breast:
6	chr3:48281295..48284269-chr3:48341390..48344515,3	MCF-7	breast:
7	chr3:48341336..48343730-chr3:48444609..48447589,3	K562	blood:
8	chr3:48341872..48344261-chr3:48469680..48472661,4	MCF-7	breast:
9	chr3:48341910..48343501-chr3:48486949..48488485,2	MCF-7	breast:
10	chr3:48341768..48344382-chr3:48487005..48489358,2	K562	blood:
11	chr3:48335073..48340448-chr3:48341483..48344077,7	K562	blood:

No data

Variant related genes	Relation type
NME6	TF binding region
NME6	CpG island
ENSG00000164053	Chromatin interaction
ENSG00000244380	Chromatin interaction
ENSG00000252466	Chromatin interaction
ENSG00000100227	Chromatin interaction
ENSG00000113739	Chromatin interaction
ENSG00000164047	Chromatin interaction
ENSG00000164048	Chromatin interaction
ENSG00000172113	Chromatin interaction
ENSG00000164050	Chromatin interaction
ENSG00000145779	Chromatin interaction
ENSG00000270022	Chromatin interaction

Extended variants
information (count: 151 )
Associated
traits (count: 34 )

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs1045482	0.83[EUR][1000 genomes]
rs11130162	0.83[EUR][1000 genomes]
rs11130163	0.83[EUR][1000 genomes]
rs11130164	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1134867	0.84[EUR][1000 genomes]
rs11706221	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706277	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11707606	0.84[EUR][1000 genomes]
rs11707997	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709691	0.97[EUR][1000 genomes]
rs11710257	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710861	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11713476	0.85[EUR][1000 genomes]
rs11714176	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714944	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715776	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715799	0.92[EUR][1000 genomes]
rs11715876	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11716371	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716848	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717716	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11718329	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11718350	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719365	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11928691	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13059037	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13060020	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061269	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066044	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066758	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13067450	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068265	0.97[EUR][1000 genomes]
rs13068288	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13069029	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070210	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071960	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072018	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13079728	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13081169	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13081633	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082158	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082859	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13084616	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085251	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13087929	0.84[EUR][1000 genomes]
rs13090538	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13094727	0.97[EUR][1000 genomes]
rs13095983	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097450	0.94[EUR][1000 genomes]
rs13100815	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17647717	0.95[EUR][1000 genomes]
rs17786132	0.89[EUR][1000 genomes]
rs2125482	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2361685	0.84[EUR][1000 genomes]
rs2541	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3197223	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34076262	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34225441	0.94[EUR][1000 genomes]
rs34589064	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34630841	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34728236	0.93[EUR][1000 genomes]
rs34749846	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34946886	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35190747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35297395	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35297486	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35411187	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35414021	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35456569	0.89[EUR][1000 genomes]
rs35778847	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35802497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35944878	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36020562	0.92[EUR][1000 genomes]
rs36064160	0.84[EUR][1000 genomes]
rs36075665	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36092070	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36121690	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3729577	0.84[EUR][1000 genomes]
rs3731487	0.84[EUR][1000 genomes]
rs3731489	0.84[EUR][1000 genomes]
rs3731497	0.84[EUR][1000 genomes]
rs3731513	0.84[EUR][1000 genomes]
rs3731515	0.84[EUR][1000 genomes]
rs3731534	0.84[EUR][1000 genomes]
rs3731550	0.83[EUR][1000 genomes]
rs3731555	0.83[EUR][1000 genomes]
rs3937	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4130522	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4130995	0.83[EUR][1000 genomes]
rs4131361	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4131362	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4371540	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4392440	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4404473	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4420898	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4479622	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4511915	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4511916	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4541431	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4619808	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4632568	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6442110	0.83[EUR][1000 genomes]
rs6442111	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6775179	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6782166	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6787500	0.83[EUR][1000 genomes]
rs6791930	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6793150	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793223	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793239	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794644	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6796343	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6800492	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6801801	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6804986	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806112	0.81[EUR][1000 genomes]
rs71323391	0.94[EUR][1000 genomes]
rs71323394	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71323395	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71323396	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71323397	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs745116	0.94[EUR][1000 genomes]
rs7614532	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7619865	0.82[EUR][1000 genomes]
rs7621785	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624450	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632297	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636461	0.94[EUR][1000 genomes]
rs7644414	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7645425	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647817	0.84[EUR][1000 genomes]
rs7648720	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7652233	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653152	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653336	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311421	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs936426	0.84[EUR][1000 genomes]
rs936427	0.97[EUR][1000 genomes]
rs9818937	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9819094	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9825637	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830016	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9831531	0.84[EUR][1000 genomes]
rs9833309	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9834095	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9837228	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9846818	0.81[EUR][1000 genomes]
rs9847953	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9850672	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9853804	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834683	chr3:48301504-48493261	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

mRNA abundance (count:34)

SNP	Gene	Cis/trans	Tissue	Source
rs34523942	ZNF589	cis	Thyroid	GTEx
rs34523942	MRPS18AP1	cis	Heart Left Ventricle	GTEx
rs34523942	ZNF589	cis	Artery Aorta	GTEx
rs34523942	ZNF589	Cis_1M	lymphoblastoid	RTeQTL
rs34523942	NME6	cis	Nerve Tibial	GTEx
rs34523942	MRPS18AP1	cis	Adipose Subcutaneous	GTEx
rs34523942	ZNF589	cis	Nerve Tibial	GTEx
rs34523942	CDC25A	cis	Thyroid	GTEx
rs34523942	ZNF589	cis	Skin Sun Exposed Lower leg	GTEx
rs34523942	MRPS18AP1	cis	Nerve Tibial	GTEx
rs34523942	CDC25A	cis	Muscle Skeletal	GTEx
rs34523942	CDC25A	cis	Adipose Subcutaneous	GTEx
rs34523942	CDC25A	cis	Artery Tibial	GTEx
rs34523942	NME6	cis	Skin Sun Exposed Lower leg	GTEx
rs34523942	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs34523942	MRPS18AP1	cis	Skin Sun Exposed Lower leg	GTEx
rs34523942	MRPS18AP1	cis	Artery Aorta	GTEx
rs34523942	ZNF589	cis	Esophagus Muscularis	GTEx
rs34523942	NME6	cis	Esophagus Muscularis	GTEx
rs34523942	MRPS18AP1	cis	Artery Tibial	GTEx
rs34523942	ZNF589	cis	Esophagus Mucosa	GTEx
rs34523942	FCF1P2	cis	Artery Tibial	GTEx
rs34523942	MRPS18AP1	cis	Stomach	GTEx
rs34523942	MRPS18AP1	cis	lung	GTEx
rs34523942	ZNF589	cis	Stomach	GTEx
rs34523942	MRPS18AP1	cis	Esophagus Mucosa	GTEx
rs34523942	NME6	cis	Adipose Subcutaneous	GTEx
rs34523942	MAP4	Cis_1M	lymphoblastoid	RTeQTL
rs34523942	NME6	cis	multi-tissue	Pritchard
rs34523942	NME6	Cis_1M	lymphoblastoid	RTeQTL
rs34523942	ZNF589	cis	Artery Tibial	GTEx
rs34523942	MRPS18AP1	cis	Esophagus Muscularis	GTEx
rs34523942	NME6	cis	Artery Tibial	GTEx
rs34523942	MRPS18AP1	cis	Thyroid	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48341600-48342800	Flanking Active TSS	Primary hematopoietic stem cells	blood
2	chr3:48341600-48343000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:48341800-48343200	Active TSS	GM12878-XiMat	blood
4	chr3:48341800-48343800	Active TSS	H1 Cell Line	embryonic stem cell
5	chr3:48341800-48343800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:48341800-48343800	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr3:48341800-48343800	Flanking Active TSS	HMEC	breast
8	chr3:48342000-48343200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
9	chr3:48342000-48343600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr3:48342000-48343600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:48342000-48343600	Active TSS	Ovary	ovary
12	chr3:48342000-48343800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:48342200-48342800	Active TSS	Thymus	Thymus
14	chr3:48342200-48343000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:48342200-48343000	Active TSS	Colonic Mucosa	Colon
16	chr3:48342200-48343200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:48342200-48343200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:48342200-48343200	Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr3:48342200-48343200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr3:48342200-48343200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:48342200-48343200	Active TSS	Liver	Liver
22	chr3:48342200-48343200	Active TSS	Fetal Brain Female	brain
23	chr3:48342200-48343200	Active TSS	Stomach Smooth Muscle	stomach
24	chr3:48342200-48343200	Active TSS	HUVEC	blood vessel
25	chr3:48342200-48343200	Active TSS	Monocytes-CD14+_RO01746	blood
26	chr3:48342200-48343200	Active TSS	NH-A	brain
27	chr3:48342200-48343200	Active TSS	Osteobl	bone
28	chr3:48342200-48343400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:48342200-48343400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:48342200-48343400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:48342200-48343400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:48342200-48343400	Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr3:48342200-48343400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr3:48342200-48343400	Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr3:48342200-48343400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr3:48342200-48343400	Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr3:48342200-48343400	Active TSS	Aorta	Aorta
38	chr3:48342200-48343400	Active TSS	Brain Angular Gyrus	brain
39	chr3:48342200-48343400	Active TSS	Brain Anterior Caudate	brain
40	chr3:48342200-48343400	Active TSS	Brain Cingulate Gyrus	brain
41	chr3:48342200-48343400	Active TSS	Brain Substantia Nigra	brain
42	chr3:48342200-48343400	Active TSS	Duodenum Mucosa	Duodenum
43	chr3:48342200-48343400	Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr3:48342200-48343400	Active TSS	Fetal Heart	heart
45	chr3:48342200-48343400	Active TSS	Fetal Lung	lung
46	chr3:48342200-48343400	Active TSS	Fetal Stomach	stomach
47	chr3:48342200-48343400	Active TSS	Pancreas	Pancrea
48	chr3:48342200-48343400	Active TSS	Rectal Mucosa Donor 29	rectum
49	chr3:48342200-48343400	Active TSS	Rectal Mucosa Donor 31	rectum
50	chr3:48342200-48343400	Active TSS	Skeletal Muscle Male	skeletal muscle

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