Variant report

Variant	rs9819094
Chromosome Location	chr3:48319558-48319559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:48312759..48319718-chr3:48469447..48473702,8	MCF-7	breast:
2	chr3:48319008..48321594-chr3:48336841..48339806,2	K562	blood:
3	chr3:48318319..48320980-chr3:48323069..48325420,2	MCF-7	breast:
4	chr3:48308211..48311790-chr3:48318412..48322138,4	K562	blood:
5	chr3:48319259..48321840-chr3:48323712..48326598,2	K562	blood:
6	chr3:48313740..48316936-chr3:48317939..48320395,4	K562	blood:
7	chr3:48318272..48320566-chr3:48327646..48330143,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164050	Chromatin interaction
ENSG00000199476	Chromatin interaction

Extended variants
information (count: 157 )
Associated
traits (count: 49 )

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs1045482	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs11130162	0.85[EUR][1000 genomes]
rs11130163	0.85[EUR][1000 genomes]
rs11130164	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1134867	0.82[EUR][1000 genomes]
rs11706221	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11706277	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11707606	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11707997	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11709691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11710257	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11710861	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11713476	0.82[EUR][1000 genomes]
rs11714176	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11714944	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11715776	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11715799	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11715876	0.86[EUR][1000 genomes]
rs11716371	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11716848	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11717716	0.94[EUR][1000 genomes]
rs11718329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11718350	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11719365	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11928691	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12486935	0.92[JPT][hapmap]
rs12486944	0.91[JPT][hapmap]
rs13059037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13060020	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13061269	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13066044	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13066758	0.89[CEU][hapmap];0.89[CHB][hapmap];0.97[EUR][1000 genomes]
rs13067450	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13068265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13068288	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13069029	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13070210	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13071960	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13072018	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079728	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13081169	0.95[CEU][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13081633	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13082158	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13082859	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13084616	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13085251	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13087050	0.83[JPT][hapmap]
rs13087929	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13090538	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13094727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13095983	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13097450	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13100815	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17647717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17786132	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2125482	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2361685	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2541	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3197223	0.95[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs34076262	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34225441	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34523942	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34589064	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34630841	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34728236	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34749846	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34946886	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35190747	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35297395	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35297486	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35411187	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35414021	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35456569	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35778847	0.97[EUR][1000 genomes]
rs35802497	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35944878	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36020562	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36064160	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36075665	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36092070	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36121690	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3729577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3731487	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3731489	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3731497	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3731513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3731515	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3731534	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3731550	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3731555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs3937	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4130522	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4130995	0.81[EUR][1000 genomes]
rs4131361	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4131362	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4371540	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4392440	0.97[EUR][1000 genomes]
rs4404473	0.91[EUR][1000 genomes]
rs4420898	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4479622	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4511915	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs4511916	0.97[EUR][1000 genomes]
rs4541431	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4619808	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4632568	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6442110	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs6442111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6775179	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782166	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6787500	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs6791930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6793150	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6793223	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6793239	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6794644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6796343	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6796490	0.88[CEU][hapmap]
rs6800492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801801	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804986	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6806112	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs71323391	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71323394	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71323395	0.94[EUR][1000 genomes]
rs71323396	0.94[EUR][1000 genomes]
rs71323397	0.94[EUR][1000 genomes]
rs745116	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7614532	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7621785	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7624450	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7632297	0.95[CEU][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7636461	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7644414	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7645425	0.95[CEU][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7647817	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7648720	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7652233	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7653152	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7653336	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9311421	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs936426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs936427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9818937	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9825637	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9830016	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9831531	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9833309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834095	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9837228	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9850672	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9853804	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009243	chr3:47935331-48340448	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv536562	chr3:47935331-48340448	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1002067	chr3:47996472-48326518	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv834683	chr3:48301504-48493261	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	esv3428777	chr3:48314320-48319936	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:49)

SNP	Gene	Cis/trans	Tissue	Source
rs9819094	XCR1	cis	parietal	SCAN
rs9819094	ZNF589	cis	Brain Pons	GTEx
rs9819094	NME6	cis	lymphoblastoid	seeQTL
rs9819094	ZNF589	cis	cerebellum	SCAN
rs9819094	CDC25A	cis	Artery Tibial	GTEx
rs9819094	NME6	cis	Lymphoblastoid	GTEx
rs9819094	NME6	cis	cerebellum	SCAN
rs9819094	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs9819094	CDC25A	cis	cerebellum	SCAN
rs9819094	ZNF589	cis	parietal	SCAN
rs9819094	ZNF589	cis	Thyroid	GTEx
rs9819094	NME6	cis	Esophagus Muscularis	GTEx
rs9819094	ZNF589	cis	multi-tissue	Pritchard
rs9819094	IQCF2	cis	parietal	SCAN
rs9819094	ZNF589	cis	Esophagus Muscularis	GTEx
rs9819094	RBM5	cis	cerebellum	SCAN
rs9819094	MRPS18AP1	cis	Heart Left Ventricle	GTEx
rs9819094	MRPS18AP1	cis	Stomach	GTEx
rs9819094	NME6	cis	Nerve Tibial	GTEx
rs9819094	ZNF589	cis	Artery Tibial	GTEx
rs9819094	FCF1P2	cis	Artery Tibial	GTEx
rs9819094	NME6	cis	Muscle Skeletal	GTEx
rs9819094	CDC25A	cis	Adipose Subcutaneous	GTEx
rs9819094	ZNF589	cis	brain	seeQTL
rs9819094	ZNF589	cis	Stomach	GTEx
rs9819094	CDC25A	cis	Thyroid	GTEx
rs9819094	NME6	cis	Skin Sun Exposed Lower leg	GTEx
rs9819094	ARIH2	cis	parietal	SCAN
rs9819094	MRPS18AP1	cis	Esophagus Muscularis	GTEx
rs9819094	MRPS18AP1	cis	Artery Tibial	GTEx
rs9819094	NME6	cis	multi-tissue	Pritchard
rs9819094	NME6	cis	Artery Tibial	GTEx
rs9819094	ZNF589	cis	Skin Sun Exposed Lower leg	GTEx
rs9819094	MRPS18AP1	cis	Esophagus Mucosa	GTEx
rs9819094	ZNF589	cis	Esophagus Mucosa	GTEx
rs9819094	MRPS18AP1	cis	Artery Aorta	GTEx
rs9819094	CDC25A	cis	Muscle Skeletal	GTEx
rs9819094	MRPS18AP1	cis	Skin Sun Exposed Lower leg	GTEx
rs9819094	DALRD3	cis	cerebellum	SCAN
rs9819094	ZNF589	cis	Cerebellum	GTEx
rs9819094	MRPS18AP1	cis	Thyroid	GTEx
rs9819094	MRPS18AP1	cis	Nerve Tibial	GTEx
rs9819094	ZNF589	cis	Nerve Tibial	GTEx
rs9819094	MRPS18AP1	cis	lung	GTEx
rs9819094	AMT	cis	parietal	SCAN
rs9819094	MRPS18AP1	cis	Adipose Subcutaneous	GTEx
rs9819094	PLXNB1	cis	parietal	SCAN
rs9819094	ZNF589	cis	Artery Aorta	GTEx
rs9819094	WDR6	cis	multi-tissue	Pritchard

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48309400-48321000	Weak transcription	Right Atrium	heart
2	chr3:48310800-48330200	Weak transcription	Fetal Lung	lung
3	chr3:48311000-48333800	Weak transcription	Brain Anterior Caudate	brain
4	chr3:48311200-48330800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:48311200-48334400	Weak transcription	Aorta	Aorta
6	chr3:48311400-48333400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:48311400-48334200	Weak transcription	Thymus	Thymus
8	chr3:48311600-48330800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:48311600-48334200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr3:48311600-48334200	Weak transcription	Liver	Liver
11	chr3:48311800-48329800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr3:48312000-48334400	Weak transcription	Brain Substantia Nigra	brain
13	chr3:48312200-48331000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:48312400-48320800	Weak transcription	GM12878-XiMat	blood
15	chr3:48312400-48330200	Weak transcription	Fetal Muscle Leg	muscle
16	chr3:48312400-48334400	Weak transcription	Brain Angular Gyrus	brain
17	chr3:48312600-48320400	Weak transcription	Primary T cells from cord blood	blood
18	chr3:48312600-48323600	Weak transcription	Spleen	Spleen
19	chr3:48312600-48333800	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:48312800-48328000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:48312800-48330200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr3:48312800-48334400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr3:48313000-48330200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:48313000-48335400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:48313400-48330000	Weak transcription	Fetal Brain Female	brain
26	chr3:48313800-48330200	Weak transcription	Brain Germinal Matrix	brain
27	chr3:48313800-48330800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:48314000-48330200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:48314000-48334200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:48314200-48322600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:48314600-48335800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:48315600-48330800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr3:48317600-48320800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr3:48317600-48321200	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr3:48317600-48321200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:48317600-48321600	Enhancers	H1 Cell Line	embryonic stem cell
37	chr3:48318000-48320600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr3:48318000-48321000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr3:48318000-48321800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:48318000-48326200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr3:48318200-48321000	Weak transcription	Placenta	Placenta
42	chr3:48318800-48321400	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr3:48318800-48323600	Weak transcription	Gastric	stomach
44	chr3:48318800-48330800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr3:48319000-48319600	Enhancers	H9 Cell Line	embryonic stem cell
46	chr3:48319000-48320000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr3:48319000-48320600	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr3:48319000-48321200	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr3:48319000-48321400	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr3:48319200-48320000	Genic enhancers	HUES64 Cell Line	embryonic stem cell

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