Variant report
| Variant | rs13158725 |
|---|---|
| Chromosome Location | chr5:41107314-41107315 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1008761 | 0.83[AMR][1000 genomes] |
| rs11749976 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11750584 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13159248 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13174484 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1423404 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1423408 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2301247 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34305798 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs35807549 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs36183568 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3792909 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62360811 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs66527047 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6883572 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7705375 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7723986 | 0.80[EUR][1000 genomes] |
| rs7727839 | 0.80[EUR][1000 genomes] |
| rs9332457 | 0.80[EUR][1000 genomes] |
| rs975226 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830268 | chr5:40897361-41138366 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:41104800-41111600 | Weak transcription | Ovary | ovary |
