Variant report

Variant	rs1423408
Chromosome Location	chr5:41092321-41092322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41085041..41086562-chr5:41092242..41094843,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1008761	0.83[AMR][1000 genomes]
rs11749976	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11750584	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158725	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13158729	0.82[CEU][hapmap]
rs13159248	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13174484	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13177483	0.83[CEU][hapmap];0.90[CHB][hapmap]
rs1345800	0.82[CEU][hapmap]
rs1423391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1423404	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17198998	0.81[EUR][1000 genomes]
rs2301247	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34305798	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35786815	0.80[EUR][1000 genomes]
rs35807549	0.84[AMR][1000 genomes]
rs35949425	0.80[EUR][1000 genomes]
rs36183568	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3792909	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4552672	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs62360805	0.80[EUR][1000 genomes]
rs62360811	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66527047	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6883572	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705375	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7727839	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs975226	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41091400-41093600	Weak transcription	Ovary	ovary
2	chr5:41092000-41097600	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links