Variant report

Variant	rs1423391
Chromosome Location	chr5:41070840-41070841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1008761	0.84[AMR][1000 genomes]
rs10512757	0.84[MEX][hapmap];0.80[EUR][1000 genomes]
rs11749976	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11750584	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13158725	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13158729	0.82[CEU][hapmap];0.84[MEX][hapmap];0.80[EUR][1000 genomes]
rs13159248	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13174484	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13177483	0.80[CEU][hapmap];0.90[CHB][hapmap];0.83[MEX][hapmap]
rs13186888	0.80[EUR][1000 genomes]
rs1345800	0.82[CEU][hapmap]
rs1423390	0.80[EUR][1000 genomes]
rs1423404	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1423408	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17257858	0.82[CEU][hapmap]
rs17258193	0.80[EUR][1000 genomes]
rs2301247	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34305798	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35807549	0.86[AMR][1000 genomes]
rs36183568	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3792909	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4552672	0.81[CEU][hapmap];0.90[CHB][hapmap]
rs62360811	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66527047	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6883572	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7705375	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7727839	0.80[CEU][hapmap];0.90[CHB][hapmap]
rs975226	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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