Variant report

Variant	rs36183568
Chromosome Location	chr14:95073936-95073937
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr14:95073822-95073983	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
SERPINA3	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1008761	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10512757	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10512762	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11748979	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11749976	0.87[ASN][1000 genomes]
rs11750584	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13158601	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13158725	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13158729	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13159248	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13167951	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13174484	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13186888	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13189407	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1423390	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1423404	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1423408	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17198998	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17258193	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17259287	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2301247	0.87[ASN][1000 genomes]
rs34305798	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34336834	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35786815	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35807549	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35915011	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35931290	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35949425	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3792910	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3805713	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62360805	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62360811	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs66527047	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6883572	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72753945	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7705375	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9292802	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs975226	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470662	chr14:94762879-95265130	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv565623	chr14:94859453-95101343	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1038376	chr14:94869804-95096657	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv542174	chr14:94869804-95096657	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1052900	chr14:94894551-95103215	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv542175	chr14:94894551-95103215	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv832865	chr14:94965794-95134231	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:95067000-95078600	Weak transcription	Gastric	stomach
2	chr14:95067400-95078800	Weak transcription	Right Atrium	heart
3	chr14:95068600-95076800	Weak transcription	Stomach Mucosa	stomach
4	chr14:95068600-95078600	Weak transcription	Spleen	Spleen
5	chr14:95068800-95075800	Weak transcription	HSMM	muscle
6	chr14:95068800-95076800	Weak transcription	Liver	Liver
7	chr14:95069000-95076000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:95069400-95075800	Weak transcription	Osteobl	bone
9	chr14:95069400-95076000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:95069400-95076200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:95071400-95076400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:95071400-95076400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr14:95072200-95075800	Weak transcription	A549	lung
14	chr14:95073200-95076000	Weak transcription	HSMMtube	muscle
15	chr14:95073200-95077600	Weak transcription	Ovary	ovary
16	chr14:95073400-95075800	Weak transcription	HMEC	breast
17	chr14:95073400-95076000	Weak transcription	HepG2	liver
18	chr14:95073400-95078600	Weak transcription	Brain Anterior Caudate	brain
19	chr14:95073400-95078600	Weak transcription	Fetal Stomach	stomach
20	chr14:95073600-95076000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:95073600-95076000	Weak transcription	Pancreas	Pancrea
22	chr14:95073600-95076400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr14:95073600-95078600	Weak transcription	Fetal Lung	lung
24	chr14:95073600-95078800	Weak transcription	Psoas Muscle	Psoas
25	chr14:95073600-95079600	Weak transcription	Brain Substantia Nigra	brain

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