Variant report

Variant	rs13158601
Chromosome Location	chr5:41156008-41156009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1008761	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1025043	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512757	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10512762	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10512766	0.82[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs11748979	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13157706	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs13158729	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13159740	0.93[ASN][1000 genomes]
rs13167227	0.97[ASN][1000 genomes]
rs13167951	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13173930	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs13174484	0.96[CEU][hapmap];0.89[CHB][hapmap];0.90[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13177483	0.89[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs13182727	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185550	0.95[ASN][1000 genomes]
rs13186888	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13189407	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1345800	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1423390	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17198998	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17201103	0.95[ASN][1000 genomes]
rs17257858	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17258193	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17259287	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17260165	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17260228	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17260948	0.90[ASN][1000 genomes]
rs1822822	0.91[ASN][1000 genomes]
rs34205640	0.95[ASN][1000 genomes]
rs34305798	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34336834	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34675731	0.86[ASN][1000 genomes]
rs35179056	0.91[ASN][1000 genomes]
rs35786815	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35807549	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35915011	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35931290	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35949425	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36183568	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3792909	0.98[ASN][1000 genomes]
rs3792910	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805713	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4552672	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4642410	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62360805	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62361614	0.91[ASN][1000 genomes]
rs66527047	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6876819	1.00[CHB][hapmap]
rs6883180	0.97[ASN][1000 genomes]
rs6898364	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs72753938	0.90[ASN][1000 genomes]
rs72753945	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs749629	0.88[ASN][1000 genomes]
rs7723986	0.93[ASN][1000 genomes]
rs7727839	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9292802	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9332457	0.93[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41139800-41182000	Weak transcription	Left Ventricle	heart
2	chr5:41141600-41156400	Strong transcription	Liver	Liver
3	chr5:41151000-41181400	Weak transcription	Fetal Intestine Small	intestine
4	chr5:41152400-41156600	Strong transcription	Fetal Intestine Large	intestine
5	chr5:41153200-41169000	Weak transcription	Pancreas	Pancrea
6	chr5:41154000-41156200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:41155000-41159200	Weak transcription	Adipose Nuclei	Adipose
8	chr5:41155200-41156400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:41155200-41157400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:41155200-41161600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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