Variant report

Variant	rs13167227
Chromosome Location	chr5:41184828-41184829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1008761	0.91[ASN][1000 genomes]
rs1025043	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10512757	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10512762	0.91[ASN][1000 genomes]
rs10512766	0.88[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs11748979	0.91[ASN][1000 genomes]
rs13157706	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs13158601	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13158729	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13159740	0.97[ASN][1000 genomes]
rs13167951	0.97[ASN][1000 genomes]
rs13173930	1.00[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs13174484	0.81[CEU][hapmap];0.89[CHB][hapmap]
rs13177483	0.81[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs13182727	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13185550	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13186888	0.83[ASN][1000 genomes]
rs13189407	0.91[ASN][1000 genomes]
rs1345800	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1423390	0.83[ASN][1000 genomes]
rs17198998	0.86[ASN][1000 genomes]
rs17201103	0.98[ASN][1000 genomes]
rs17257858	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17258193	0.83[ASN][1000 genomes]
rs17259287	0.91[ASN][1000 genomes]
rs17260165	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17260228	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17260948	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1822822	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34205640	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34336834	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34675731	0.90[ASN][1000 genomes]
rs35179056	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35786815	0.86[ASN][1000 genomes]
rs35807549	0.90[ASN][1000 genomes]
rs35915011	0.91[ASN][1000 genomes]
rs35931290	0.91[ASN][1000 genomes]
rs35949425	0.86[ASN][1000 genomes]
rs3792909	0.95[ASN][1000 genomes]
rs3792910	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805713	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4552672	0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4642410	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360805	0.83[ASN][1000 genomes]
rs62361614	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6876819	1.00[CHB][hapmap]
rs6883180	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6898364	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs72753938	0.86[ASN][1000 genomes]
rs72753945	0.91[ASN][1000 genomes]
rs749629	0.91[ASN][1000 genomes]
rs7723986	0.97[ASN][1000 genomes]
rs7727839	0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9292802	0.91[ASN][1000 genomes]
rs9332457	0.97[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41181400-41185200	Enhancers	Fetal Intestine Small	intestine
2	chr5:41181600-41185200	Enhancers	Fetal Intestine Large	intestine
3	chr5:41181800-41186400	Enhancers	Stomach Mucosa	stomach
4	chr5:41182000-41185000	Genic enhancers	Liver	Liver
5	chr5:41182000-41185600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:41183400-41192200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:41184200-41185600	Weak transcription	Adipose Nuclei	Adipose
8	chr5:41184200-41186000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:41184200-41186000	Weak transcription	Ovary	ovary
10	chr5:41184800-41185000	Enhancers	Small Intestine	intestine
11	chr5:41184800-41195200	Weak transcription	Pancreas	Pancrea

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