Variant report

Variant	rs6898364
Chromosome Location	chr5:41051909-41051910
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1008761	0.86[ASN][1000 genomes]
rs1025043	0.82[ASN][1000 genomes]
rs10512757	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[ASN][1000 genomes]
rs10512762	0.86[ASN][1000 genomes]
rs10512766	0.88[CHB][hapmap]
rs11748979	0.86[ASN][1000 genomes]
rs13157706	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13158601	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs13158729	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.95[ASN][1000 genomes]
rs13167951	0.82[ASN][1000 genomes]
rs13173930	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13174484	0.85[CEU][hapmap];0.89[CHB][hapmap]
rs13177483	0.89[CHB][hapmap];0.84[CHD][hapmap]
rs13182727	0.82[ASN][1000 genomes]
rs13186888	0.95[ASN][1000 genomes]
rs13189407	0.86[ASN][1000 genomes]
rs1345800	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap]
rs1423390	0.95[ASN][1000 genomes]
rs17198998	0.91[ASN][1000 genomes]
rs17257858	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs17258193	0.95[ASN][1000 genomes]
rs17259287	0.86[ASN][1000 genomes]
rs17260165	1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs17260228	0.82[ASN][1000 genomes]
rs34336834	0.82[ASN][1000 genomes]
rs35786815	0.91[ASN][1000 genomes]
rs35807549	0.88[ASN][1000 genomes]
rs35915011	0.86[ASN][1000 genomes]
rs35931290	0.86[ASN][1000 genomes]
rs35949425	0.91[ASN][1000 genomes]
rs3792909	0.80[ASN][1000 genomes]
rs3792910	0.82[ASN][1000 genomes]
rs3805713	0.82[ASN][1000 genomes]
rs4552672	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs62360805	0.95[ASN][1000 genomes]
rs6876819	1.00[CHB][hapmap]
rs72753938	0.81[ASN][1000 genomes]
rs72753945	0.86[ASN][1000 genomes]
rs7727839	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs9292802	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6898364	FBXO4	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41050000-41052000	Weak transcription	Aorta	Aorta

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