Variant report

Variant	rs17198998
Chromosome Location	chr5:41088380-41088381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41082918..41084564-chr5:41086749..41089666,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1008761	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1025043	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10512757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10512762	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11748979	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11750584	0.81[EUR][1000 genomes]
rs13158601	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13158729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13159740	0.83[ASN][1000 genomes]
rs13167227	0.86[ASN][1000 genomes]
rs13167951	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13173930	0.93[ASN][1000 genomes]
rs13174484	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13177483	0.83[ASN][1000 genomes]
rs13182727	0.90[ASN][1000 genomes]
rs13185550	0.85[ASN][1000 genomes]
rs13186888	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13189407	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1423390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1423404	0.80[EUR][1000 genomes]
rs1423408	0.81[EUR][1000 genomes]
rs17201103	0.85[ASN][1000 genomes]
rs17258193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17259287	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17260165	0.90[ASN][1000 genomes]
rs17260228	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1822822	0.82[ASN][1000 genomes]
rs34205640	0.85[ASN][1000 genomes]
rs34305798	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34336834	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35179056	0.82[ASN][1000 genomes]
rs35786815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35807549	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35915011	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35931290	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35949425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36183568	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3792909	0.88[ASN][1000 genomes]
rs3792910	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805713	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4552672	0.83[ASN][1000 genomes]
rs4642410	0.86[ASN][1000 genomes]
rs62360805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360811	0.81[EUR][1000 genomes]
rs62361614	0.82[ASN][1000 genomes]
rs66527047	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6883180	0.87[ASN][1000 genomes]
rs6883572	0.81[EUR][1000 genomes]
rs6898364	0.91[ASN][1000 genomes]
rs72753938	0.89[ASN][1000 genomes]
rs72753945	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7723986	0.83[ASN][1000 genomes]
rs7727839	0.83[ASN][1000 genomes]
rs9292802	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9332457	0.83[ASN][1000 genomes]
rs975226	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41087000-41088400	Enhancers	Fetal Heart	heart
2	chr5:41087600-41088400	Enhancers	NH-A	brain

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