Variant report

Variant	rs9332457
Chromosome Location	chr5:41185172-41185173
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1008761	0.88[ASN][1000 genomes]
rs1025043	0.93[ASN][1000 genomes]
rs10512757	0.88[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10512762	0.88[ASN][1000 genomes]
rs10512766	0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs11748979	0.88[ASN][1000 genomes]
rs11749976	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13157706	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs13158601	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13158725	0.80[EUR][1000 genomes]
rs13158729	0.89[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs13159248	0.80[EUR][1000 genomes]
rs13159740	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167227	0.97[ASN][1000 genomes]
rs13167951	0.93[ASN][1000 genomes]
rs13173930	0.89[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap]
rs13177483	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.93[LWK][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182727	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13185550	0.98[ASN][1000 genomes]
rs13186888	0.80[ASN][1000 genomes]
rs13189407	0.88[ASN][1000 genomes]
rs1345800	0.89[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs1423390	0.80[ASN][1000 genomes]
rs1423391	0.81[CEU][hapmap];0.90[CHB][hapmap]
rs17198998	0.83[ASN][1000 genomes]
rs17201103	0.98[ASN][1000 genomes]
rs17257858	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs17258193	0.80[ASN][1000 genomes]
rs17259287	0.88[ASN][1000 genomes]
rs17260165	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17260228	0.93[ASN][1000 genomes]
rs17260948	0.93[ASN][1000 genomes]
rs1822822	0.95[ASN][1000 genomes]
rs2301247	0.83[EUR][1000 genomes]
rs34205640	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34336834	0.93[ASN][1000 genomes]
rs34675731	0.90[ASN][1000 genomes]
rs35179056	0.95[ASN][1000 genomes]
rs35786815	0.83[ASN][1000 genomes]
rs35807549	0.87[ASN][1000 genomes]
rs35915011	0.88[ASN][1000 genomes]
rs35931290	0.88[ASN][1000 genomes]
rs35949425	0.83[ASN][1000 genomes]
rs3792909	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3792910	0.93[ASN][1000 genomes]
rs3805713	0.93[ASN][1000 genomes]
rs4400166	0.83[MKK][hapmap]
rs4552672	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4642410	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62360805	0.80[ASN][1000 genomes]
rs62361614	0.95[ASN][1000 genomes]
rs6876819	0.89[CHB][hapmap]
rs6883180	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6898364	0.89[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap]
rs72753938	0.83[ASN][1000 genomes]
rs72753945	0.88[ASN][1000 genomes]
rs749629	0.92[ASN][1000 genomes]
rs7723986	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7727839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292802	0.88[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41181400-41185200	Enhancers	Fetal Intestine Small	intestine
2	chr5:41181600-41185200	Enhancers	Fetal Intestine Large	intestine
3	chr5:41181800-41186400	Enhancers	Stomach Mucosa	stomach
4	chr5:41182000-41185600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:41183400-41192200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:41184200-41185600	Weak transcription	Adipose Nuclei	Adipose
7	chr5:41184200-41186000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:41184200-41186000	Weak transcription	Ovary	ovary
9	chr5:41184800-41195200	Weak transcription	Pancreas	Pancrea
10	chr5:41185000-41185200	Enhancers	Fetal Kidney	kidney
11	chr5:41185000-41186400	Active TSS	Right Atrium	heart
12	chr5:41185000-41187600	Strong transcription	Liver	Liver

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