Variant report

Variant	rs17260948
Chromosome Location	chr5:41217034-41217035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr5:41216904-41217091	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
C6	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1008761	0.85[ASN][1000 genomes]
rs1025043	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10512762	0.85[ASN][1000 genomes]
rs10512766	0.97[ASN][1000 genomes]
rs11748979	0.85[ASN][1000 genomes]
rs13158601	0.90[ASN][1000 genomes]
rs13159740	0.93[ASN][1000 genomes]
rs13167227	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13167951	0.90[ASN][1000 genomes]
rs13177483	0.93[ASN][1000 genomes]
rs13182727	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13185550	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13189407	0.85[ASN][1000 genomes]
rs17201103	0.95[ASN][1000 genomes]
rs17259287	0.85[ASN][1000 genomes]
rs17260165	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17260228	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1822822	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34205640	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34336834	0.90[ASN][1000 genomes]
rs34675731	0.96[ASN][1000 genomes]
rs35179056	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35807549	0.83[ASN][1000 genomes]
rs35915011	0.85[ASN][1000 genomes]
rs35931290	0.85[ASN][1000 genomes]
rs3792909	0.88[ASN][1000 genomes]
rs3792910	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805713	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4552672	0.93[ASN][1000 genomes]
rs4642410	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62361614	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6883180	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72753945	0.85[ASN][1000 genomes]
rs749629	0.98[ASN][1000 genomes]
rs7723986	0.93[ASN][1000 genomes]
rs7727839	0.93[ASN][1000 genomes]
rs9292802	0.85[ASN][1000 genomes]
rs9332457	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv4808	chr5:41203254-41251985	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41214000-41218600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:41215000-41218800	Weak transcription	Fetal Intestine Small	intestine
3	chr5:41215400-41218600	Weak transcription	Fetal Intestine Large	intestine
4	chr5:41215800-41218600	Weak transcription	Ovary	ovary

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