Variant report

Variant	rs10512766
Chromosome Location	chr5:41213335-41213336
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr5:41213191-41214684	HepG2	liver:	n/a	n/a
2	EP300	chr5:41213269-41213778	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
C6	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1008761	0.82[ASN][1000 genomes]
rs1025043	0.87[ASN][1000 genomes]
rs10512757	0.86[CHB][hapmap]
rs10512762	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11748979	0.82[ASN][1000 genomes]
rs13157706	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs13158601	0.82[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs13158729	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs13159740	0.90[ASN][1000 genomes]
rs13167227	0.90[ASN][1000 genomes]
rs13167951	0.87[ASN][1000 genomes]
rs13173930	0.88[CHB][hapmap]
rs13177483	0.90[ASN][1000 genomes]
rs13182727	0.87[ASN][1000 genomes]
rs13185550	0.92[ASN][1000 genomes]
rs13189407	0.82[ASN][1000 genomes]
rs1345800	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs17201103	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17257858	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs17259287	0.82[ASN][1000 genomes]
rs17260165	0.88[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs17260228	0.87[ASN][1000 genomes]
rs17260948	0.97[ASN][1000 genomes]
rs1822822	0.95[ASN][1000 genomes]
rs34205640	0.92[ASN][1000 genomes]
rs34336834	0.87[ASN][1000 genomes]
rs34675731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35179056	0.95[ASN][1000 genomes]
rs35807549	0.80[ASN][1000 genomes]
rs35915011	0.82[ASN][1000 genomes]
rs35931290	0.82[ASN][1000 genomes]
rs3792909	0.85[ASN][1000 genomes]
rs3792910	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3805713	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4552672	0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs4642410	0.90[ASN][1000 genomes]
rs62361614	0.95[ASN][1000 genomes]
rs6876819	0.88[CHB][hapmap]
rs6883180	0.84[ASN][1000 genomes]
rs6898364	0.88[CHB][hapmap]
rs72753945	0.82[ASN][1000 genomes]
rs749629	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7723986	0.90[ASN][1000 genomes]
rs7727839	0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs9292802	0.82[ASN][1000 genomes]
rs9332457	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv4808	chr5:41203254-41251985	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41209800-41213800	Active TSS	Liver	Liver
2	chr5:41211400-41213800	Active TSS	Right Atrium	heart
3	chr5:41211600-41213600	Active TSS	Fetal Intestine Small	intestine
4	chr5:41211600-41213600	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr5:41212000-41213600	Active TSS	Fetal Intestine Large	intestine
6	chr5:41212800-41213600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:41212800-41213600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:41212800-41213600	Active TSS	Right Ventricle	heart
9	chr5:41212800-41215200	Enhancers	HepG2	liver
10	chr5:41213000-41213600	Enhancers	Stomach Mucosa	stomach
11	chr5:41213000-41213800	Enhancers	Sigmoid Colon	Sigmoid Colon

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