Variant report

Variant	rs6876819
Chromosome Location	chr5:41056295-41056296
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10512757	1.00[CHB][hapmap]
rs10512766	0.88[CHB][hapmap]
rs11750584	0.87[ASN][1000 genomes]
rs13157706	1.00[CHB][hapmap]
rs13158601	1.00[CHB][hapmap]
rs13158725	0.85[ASN][1000 genomes]
rs13158729	1.00[CHB][hapmap]
rs13159248	0.85[ASN][1000 genomes]
rs13173930	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs13174484	0.89[CHB][hapmap];0.91[ASN][1000 genomes]
rs13177483	0.89[CHB][hapmap]
rs1345800	1.00[CHB][hapmap]
rs1423404	0.85[ASN][1000 genomes]
rs1423408	0.87[ASN][1000 genomes]
rs17257858	1.00[CHB][hapmap]
rs17260165	1.00[CHB][hapmap]
rs34305798	0.91[ASN][1000 genomes]
rs36183568	0.91[ASN][1000 genomes]
rs4552672	0.89[CHB][hapmap]
rs62360811	0.87[ASN][1000 genomes]
rs66527047	0.89[ASN][1000 genomes]
rs6883572	0.87[ASN][1000 genomes]
rs6898364	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs7705375	0.83[ASN][1000 genomes]
rs7727839	0.89[CHB][hapmap]
rs975226	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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