Variant report

Variant	rs13174484
Chromosome Location	chr5:41069852-41069853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1008761	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10512757	0.96[CEU][hapmap];0.88[CHB][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10512762	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11748979	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11749976	0.87[ASN][1000 genomes]
rs11750584	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13157706	0.89[CHB][hapmap]
rs13158601	0.96[CEU][hapmap];0.89[CHB][hapmap];0.90[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13158725	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13158729	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13159248	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13167951	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13173930	0.85[CEU][hapmap];0.89[CHB][hapmap]
rs13186888	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13189407	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1345800	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[GIH][hapmap];0.95[TSI][hapmap]
rs1423390	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1423391	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.82[YRI][hapmap]
rs1423404	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1423408	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17198998	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17257858	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs17258193	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17259287	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17260165	0.85[CEU][hapmap];0.89[CHB][hapmap]
rs2301247	0.87[ASN][1000 genomes]
rs34305798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34336834	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35786815	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35807549	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35915011	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35931290	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35949425	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36183568	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792910	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3805713	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62360805	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62360811	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs66527047	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6876819	0.89[CHB][hapmap]
rs6883572	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6898364	0.85[CEU][hapmap];0.89[CHB][hapmap]
rs72753945	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7705375	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9292802	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs975226	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41065000-41070000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr5:41065000-41070000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:41069600-41070200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:41069800-41070400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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