Variant report

Variant	rs975226
Chromosome Location	chr5:41099984-41099985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11749976	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11750584	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13158725	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158729	0.82[CEU][hapmap]
rs13159248	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13174484	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13177483	0.80[CEU][hapmap];0.90[CHB][hapmap]
rs1345800	0.82[CEU][hapmap]
rs1423391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1423404	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1423408	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17198998	0.81[EUR][1000 genomes]
rs2301247	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34305798	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35786815	0.80[EUR][1000 genomes]
rs35807549	0.80[AMR][1000 genomes]
rs35949425	0.80[EUR][1000 genomes]
rs36183568	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3792909	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4552672	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs62360805	0.80[EUR][1000 genomes]
rs62360811	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66527047	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6883572	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7705375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7727839	0.81[CEU][hapmap];0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41096400-41100000	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links