Variant report

Variant	rs72753938
Chromosome Location	chr5:41117419-41117420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1008761	0.95[ASN][1000 genomes]
rs1025043	0.90[ASN][1000 genomes]
rs10512757	0.86[ASN][1000 genomes]
rs10512762	0.95[ASN][1000 genomes]
rs11748979	0.95[ASN][1000 genomes]
rs13158601	0.90[ASN][1000 genomes]
rs13158729	0.86[ASN][1000 genomes]
rs13159740	0.83[ASN][1000 genomes]
rs13167227	0.86[ASN][1000 genomes]
rs13167951	0.90[ASN][1000 genomes]
rs13173930	0.83[ASN][1000 genomes]
rs13177483	0.83[ASN][1000 genomes]
rs13182727	0.90[ASN][1000 genomes]
rs13185550	0.85[ASN][1000 genomes]
rs13186888	0.86[ASN][1000 genomes]
rs13189407	0.95[ASN][1000 genomes]
rs1423390	0.86[ASN][1000 genomes]
rs17198998	0.89[ASN][1000 genomes]
rs17201103	0.85[ASN][1000 genomes]
rs17258193	0.86[ASN][1000 genomes]
rs17259287	0.95[ASN][1000 genomes]
rs17260165	0.90[ASN][1000 genomes]
rs17260228	0.90[ASN][1000 genomes]
rs1822822	0.81[ASN][1000 genomes]
rs34205640	0.85[ASN][1000 genomes]
rs34336834	0.90[ASN][1000 genomes]
rs35179056	0.81[ASN][1000 genomes]
rs35786815	0.89[ASN][1000 genomes]
rs35807549	0.93[ASN][1000 genomes]
rs35915011	0.95[ASN][1000 genomes]
rs35931290	0.95[ASN][1000 genomes]
rs35949425	0.89[ASN][1000 genomes]
rs3792909	0.88[ASN][1000 genomes]
rs3792910	0.90[ASN][1000 genomes]
rs3805713	0.90[ASN][1000 genomes]
rs4552672	0.83[ASN][1000 genomes]
rs4642410	0.86[ASN][1000 genomes]
rs62360805	0.86[ASN][1000 genomes]
rs62361614	0.81[ASN][1000 genomes]
rs6883180	0.87[ASN][1000 genomes]
rs6898364	0.81[ASN][1000 genomes]
rs72753945	0.95[ASN][1000 genomes]
rs7723986	0.83[ASN][1000 genomes]
rs7727839	0.83[ASN][1000 genomes]
rs9292802	0.95[ASN][1000 genomes]
rs9332457	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv968825	chr5:41115701-41120789	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41116400-41128400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:41117000-41118000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:41117400-41121200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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