Variant report

Variant	rs13192291
Chromosome Location	chr6:54964746-54964747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10948880	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11754240	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11756900	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12664361	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13208701	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2064432	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs4515389	0.86[EUR][1000 genomes]
rs4588693	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4712092	0.87[CHB][hapmap]
rs4715515	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6908568	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7761568	0.86[EUR][1000 genomes]
rs7761785	0.86[EUR][1000 genomes]
rs8180551	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296771	0.89[CHB][hapmap]
rs932452	0.89[CHB][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap]
rs9349753	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9357840	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9367597	0.89[CHB][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap]
rs9367607	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9367608	0.88[CHB][hapmap]
rs9370371	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9370388	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9382440	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9382442	0.86[CHB][hapmap]
rs9382452	0.85[EUR][1000 genomes]
rs9396006	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs9396034	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9396036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9464182	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9475130	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54963600-54965200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:54964200-54964800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:54964200-54965000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:54964200-54965400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:54964200-54965800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:54964400-54965400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr6:54964400-54965600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:54964600-54973000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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