Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10948880	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11754240	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11756900	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12664361	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13192291	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4283890	0.80[ASN][1000 genomes]
rs4588693	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4715515	0.82[AMR][1000 genomes]
rs6906829	0.80[ASN][1000 genomes]
rs6908568	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7739399	0.81[EUR][1000 genomes]
rs8180551	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9349753	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9357840	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9367607	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9370364	0.80[ASN][1000 genomes]
rs9370371	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9370388	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9382440	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9396034	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9396036	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9464182	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9475130	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364886	chr6:54880042-54912395	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54877200-54881200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:54879400-54881400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:54879600-54880800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:54879600-54880800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:54879800-54882400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:54880000-54881200	Weak transcription	Fetal Stomach	stomach
7	chr6:54880000-54881400	Weak transcription	Stomach Mucosa	stomach
8	chr6:54880000-54881600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:54880400-54883200	Enhancers	Fetal Intestine Large	intestine
10	chr6:54880400-54883200	Enhancers	Fetal Lung	lung

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