Variant report

Variant	rs9396034
Chromosome Location	chr6:54930109-54930110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10485136	0.88[CHB][hapmap];0.83[MEX][hapmap]
rs10948880	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1115159	0.94[CHB][hapmap]
rs11754240	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756900	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12664361	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13192291	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13208701	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs148109	0.87[CHB][hapmap]
rs1503147	0.94[CHB][hapmap]
rs2064432	0.88[CHB][hapmap]
rs2816811	0.88[CHB][hapmap]
rs4141552	0.94[CHB][hapmap]
rs4515389	0.84[EUR][1000 genomes]
rs4588693	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4712081	0.88[CHB][hapmap];0.82[MEX][hapmap]
rs4712092	0.87[CHB][hapmap]
rs4715515	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6908568	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7453866	0.94[CHB][hapmap]
rs7761568	0.84[EUR][1000 genomes]
rs7761785	0.84[EUR][1000 genomes]
rs8180551	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9296771	0.88[CHB][hapmap]
rs932452	0.82[ASW][hapmap];0.88[CHB][hapmap];0.87[MEX][hapmap]
rs9349753	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9357840	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9367597	0.83[ASW][hapmap];0.88[CHB][hapmap];0.87[MEX][hapmap]
rs9367607	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367608	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs9370371	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9370388	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9382440	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382442	0.86[CHB][hapmap]
rs9382452	0.83[EUR][1000 genomes]
rs9396006	0.85[CHB][hapmap]
rs9396036	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464182	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9475130	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033756	chr6:54881828-54944304	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv538225	chr6:54881828-54944304	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54929400-54930800	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr6:54929800-54931600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr6:54930000-54930800	Enhancers	Pancreas	Pancrea

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