Variant report

Variant	rs9349753
Chromosome Location	chr6:54981922-54981923
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10948880	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11754240	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11756900	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12664361	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13192291	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13208701	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2064432	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs4515389	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4588693	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4712092	0.87[CHB][hapmap]
rs4715515	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6908568	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7761568	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7761785	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8180551	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9296771	0.89[CHB][hapmap]
rs932452	0.89[CHB][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap]
rs9357840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367597	0.89[CHB][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap]
rs9367607	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9367608	0.88[CHB][hapmap]
rs9370371	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9370388	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9382440	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9382442	0.86[CHB][hapmap]
rs9382452	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9396006	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs9396034	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9396036	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9464182	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9475130	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033543	chr6:54978528-55000338	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54981400-54982000	Enhancers	Hela-S3	cervix

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