Variant report

Variant	rs1320576
Chromosome Location	chr6:149358115-149358116
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149356091..149358662-chr6:149380682..149383777,5	MCF-7	breast:
2	chr6:149358004..149360292-chr6:149400901..149403577,2	MCF-7	breast:
3	chr6:149350394..149355236-chr6:149357019..149360236,5	K562	blood:
4	chr6:149351690..149353369-chr6:149357308..149360096,2	K562	blood:

Variant related genes	Relation type
ENSG00000236591	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10499255	1.00[EUR][1000 genomes]
rs17079955	1.00[EUR][1000 genomes]
rs17080135	1.00[EUR][1000 genomes]
rs17080460	1.00[EUR][1000 genomes]
rs2185249	1.00[AMR][1000 genomes]
rs56252829	1.00[EUR][1000 genomes]
rs59303380	1.00[EUR][1000 genomes]
rs60626199	1.00[EUR][1000 genomes]
rs73778945	1.00[EUR][1000 genomes]
rs73778952	1.00[EUR][1000 genomes]
rs73778957	1.00[EUR][1000 genomes]
rs73778960	1.00[EUR][1000 genomes]
rs73778961	1.00[EUR][1000 genomes]
rs73778963	1.00[EUR][1000 genomes]
rs73778964	1.00[EUR][1000 genomes]
rs73778968	1.00[EUR][1000 genomes]
rs73778969	1.00[EUR][1000 genomes]
rs7741642	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv830842	chr6:149272321-149427340	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149305400-149381400	Weak transcription	Gastric	stomach
2	chr6:149339400-149364600	Weak transcription	Lung	lung
3	chr6:149341000-149365400	Weak transcription	Right Ventricle	heart
4	chr6:149345400-149362000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:149348000-149367400	Weak transcription	Primary B cells from cord blood	blood
6	chr6:149353800-149362400	Weak transcription	Pancreas	Pancrea
7	chr6:149353800-149367400	Weak transcription	Spleen	Spleen
8	chr6:149353800-149367800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:149353800-149369800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:149354000-149358200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:149354000-149358200	Weak transcription	Fetal Thymus	thymus
12	chr6:149354000-149358400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:149354000-149362000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:149354400-149358200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:149354400-149400600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:149354600-149360600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:149354600-149372000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:149354800-149358200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:149354800-149358200	Enhancers	HSMM	muscle
20	chr6:149354800-149358400	Weak transcription	NHLF	lung
21	chr6:149354800-149365200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:149354800-149366400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:149355000-149362400	Weak transcription	Aorta	Aorta
24	chr6:149355200-149360200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:149355600-149361800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:149355800-149359800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:149355800-149381600	Weak transcription	Right Atrium	heart
28	chr6:149356600-149359600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:149356800-149358400	Enhancers	Fetal Muscle Leg	muscle
30	chr6:149356800-149358400	Enhancers	Fetal Stomach	stomach
31	chr6:149357000-149358200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:149357200-149358200	Enhancers	Fetal Muscle Trunk	muscle
33	chr6:149357200-149359200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:149357200-149362200	Weak transcription	HepG2	liver
35	chr6:149357400-149358400	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr6:149357400-149358800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:149357400-149358800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:149357600-149358200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:149357800-149358200	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr6:149357800-149358200	Enhancers	Ovary	ovary
41	chr6:149357800-149358400	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr6:149357800-149358600	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr6:149357800-149359200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:149357800-149359200	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr6:149358000-149358200	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr6:149358000-149358200	Flanking Active TSS	Colon Smooth Muscle	Colon
47	chr6:149358000-149358200	Flanking Active TSS	Fetal Brain Male	brain
48	chr6:149358000-149358200	Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr6:149358000-149358200	Flanking Active TSS	NHDF-Ad	bronchial
50	chr6:149358000-149358400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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