Variant report

Variant	rs17080135
Chromosome Location	chr6:149254880-149254881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10499255	1.00[EUR][1000 genomes]
rs12175861	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1320576	1.00[EUR][1000 genomes]
rs17079955	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080460	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56252829	1.00[EUR][1000 genomes]
rs59303380	1.00[EUR][1000 genomes]
rs60626199	1.00[EUR][1000 genomes]
rs73778945	1.00[EUR][1000 genomes]
rs73778952	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778957	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778961	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778962	0.88[AFR][1000 genomes]
rs73778963	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778964	1.00[EUR][1000 genomes]
rs73778968	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778969	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7741642	1.00[EUR][1000 genomes]
rs7752329	0.91[YRI][hapmap]
rs7763394	0.91[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149211600-149255400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:149226600-149255600	Weak transcription	Ovary	ovary
3	chr6:149240600-149256400	Weak transcription	Aorta	Aorta
4	chr6:149243600-149262600	Weak transcription	Primary B cells from cord blood	blood
5	chr6:149246000-149255600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:149246000-149262600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:149246800-149262400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:149247200-149258800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:149247200-149259000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:149247800-149268800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:149248400-149255400	Weak transcription	Fetal Heart	heart
12	chr6:149252800-149257600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:149253000-149255400	Weak transcription	Fetal Lung	lung
14	chr6:149253400-149255400	Weak transcription	Fetal Stomach	stomach
15	chr6:149253600-149256800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:149253800-149255000	Enhancers	HSMM	muscle
17	chr6:149253800-149257600	Enhancers	HSMMtube	muscle
18	chr6:149253800-149262600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:149254000-149256800	Enhancers	NHEK	skin
20	chr6:149254200-149256000	Weak transcription	NH-A	brain
21	chr6:149254400-149256000	Enhancers	HMEC	breast
22	chr6:149254600-149255000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:149254600-149255000	Enhancers	Fetal Thymus	thymus
24	chr6:149254600-149256000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:149254600-149256200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:149254600-149257600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:149254600-149257600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:149254600-149257600	Enhancers	Fetal Muscle Leg	muscle
29	chr6:149254600-149257600	Enhancers	NHDF-Ad	bronchial
30	chr6:149254800-149255000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:149254800-149255200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:149254800-149257600	Enhancers	Fetal Brain Male	brain
33	chr6:149254800-149268800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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