Variant report

Variant	rs17079955
Chromosome Location	chr6:149246365-149246366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10499255	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12175861	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1320576	1.00[EUR][1000 genomes]
rs17080135	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080460	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56252829	1.00[EUR][1000 genomes]
rs59303380	1.00[EUR][1000 genomes]
rs60626199	1.00[EUR][1000 genomes]
rs73778945	1.00[EUR][1000 genomes]
rs73778952	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778957	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778961	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778962	0.88[AFR][1000 genomes]
rs73778963	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778964	1.00[EUR][1000 genomes]
rs73778968	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778969	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7741642	1.00[EUR][1000 genomes]
rs7752329	1.00[ASW][hapmap];0.91[YRI][hapmap]
rs7753129	1.00[TSI][hapmap]
rs7763394	0.91[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149209000-149247600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:149211600-149255400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:149226600-149252800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:149226600-149255600	Weak transcription	Ovary	ovary
5	chr6:149235400-149253000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:149238400-149252600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:149240600-149247000	Weak transcription	Pancreas	Pancrea
8	chr6:149240600-149247200	Weak transcription	Dnd41	blood
9	chr6:149240600-149254600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:149240600-149256400	Weak transcription	Aorta	Aorta
11	chr6:149243600-149262600	Weak transcription	Primary B cells from cord blood	blood
12	chr6:149244200-149246800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:149244200-149247800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:149244400-149246800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr6:149244800-149246600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:149244800-149247200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:149244800-149247800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:149245000-149247200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:149245000-149247400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:149245200-149246400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:149245200-149247800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:149245200-149248000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:149245400-149246400	Enhancers	H9 Cell Line	embryonic stem cell
24	chr6:149245800-149247400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:149245800-149247400	Weak transcription	Fetal Heart	heart
26	chr6:149245800-149247600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:149246000-149255600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:149246000-149262600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:149246200-149246400	Enhancers	Colon Smooth Muscle	Colon

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