Variant report

Variant	rs73778945
Chromosome Location	chr6:149228009-149228010
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149190747..149193671-chr6:149226821..149229709,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10499255	1.00[EUR][1000 genomes]
rs1320576	1.00[EUR][1000 genomes]
rs17079955	1.00[EUR][1000 genomes]
rs17080135	1.00[EUR][1000 genomes]
rs17080460	1.00[EUR][1000 genomes]
rs56252829	1.00[EUR][1000 genomes]
rs59303380	1.00[EUR][1000 genomes]
rs60626199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778952	1.00[EUR][1000 genomes]
rs73778957	1.00[EUR][1000 genomes]
rs73778960	1.00[EUR][1000 genomes]
rs73778961	1.00[EUR][1000 genomes]
rs73778963	1.00[EUR][1000 genomes]
rs73778964	1.00[EUR][1000 genomes]
rs73778968	1.00[EUR][1000 genomes]
rs73778969	1.00[EUR][1000 genomes]
rs7741642	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv464074	chr6:149211090-149242095	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv604844	chr6:149211090-149242095	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv464075	chr6:149221294-149242095	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv470865	chr6:149221294-149242095	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604845	chr6:149221294-149242095	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149207800-149237400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:149208000-149229800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:149209000-149247600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:149209800-149230800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:149210200-149230200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:149210200-149240200	Weak transcription	Primary B cells from cord blood	blood
7	chr6:149210400-149235000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr6:149211600-149255400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:149212200-149230200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:149213200-149233400	Weak transcription	Fetal Heart	heart
11	chr6:149217600-149236800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:149221000-149230600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:149222400-149230200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:149222400-149230600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:149225400-149233400	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:149226600-149252800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:149226600-149255600	Weak transcription	Ovary	ovary
18	chr6:149226800-149232200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:149227000-149228800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:149227200-149236400	Weak transcription	Fetal Stomach	stomach
21	chr6:149227400-149228400	Weak transcription	Fetal Brain Male	brain
22	chr6:149227400-149228400	Weak transcription	Fetal Brain Female	brain
23	chr6:149227400-149240400	Weak transcription	Pancreas	Pancrea
24	chr6:149227800-149228200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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