Variant report

Variant	rs73778960
Chromosome Location	chr6:149239811-149239812
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149236497..149238060-chr6:149238123..149240349,2	K562	blood:
2	chr6:149235031..149236841-chr6:149238343..149239900,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10499255	1.00[EUR][1000 genomes]
rs12175861	1.00[AMR][1000 genomes]
rs1320576	1.00[EUR][1000 genomes]
rs17079955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080460	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56252829	1.00[EUR][1000 genomes]
rs59303380	1.00[EUR][1000 genomes]
rs60626199	1.00[EUR][1000 genomes]
rs73778945	1.00[EUR][1000 genomes]
rs73778952	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778957	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778961	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778963	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778964	1.00[EUR][1000 genomes]
rs73778968	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778969	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7741642	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv464074	chr6:149211090-149242095	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv604844	chr6:149211090-149242095	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv464075	chr6:149221294-149242095	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv470865	chr6:149221294-149242095	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604845	chr6:149221294-149242095	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149209000-149247600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:149210200-149240200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:149211600-149255400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:149226600-149252800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:149226600-149255600	Weak transcription	Ovary	ovary
6	chr6:149227400-149240400	Weak transcription	Pancreas	Pancrea
7	chr6:149230800-149244600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:149231000-149244200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:149231000-149245400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:149234200-149244600	Weak transcription	Fetal Heart	heart
11	chr6:149234200-149245800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:149234400-149245000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:149235000-149244000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:149235400-149253000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr6:149235800-149245400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:149237000-149244600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:149237400-149244400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:149237600-149245000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:149238000-149244800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:149238200-149240200	Weak transcription	Fetal Stomach	stomach
21	chr6:149238200-149240200	Weak transcription	Lung	lung
22	chr6:149238200-149244200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:149238200-149245400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:149238400-149252600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:149238800-149245200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr6:149239000-149240600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:149239400-149240000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
28	chr6:149239400-149244600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:149239600-149240200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:149239600-149242200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:149239600-149245600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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