Variant report

Variant	rs60626199
Chromosome Location	chr6:149257304-149257305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10499255	1.00[EUR][1000 genomes]
rs1320576	1.00[EUR][1000 genomes]
rs17079955	1.00[EUR][1000 genomes]
rs17080135	1.00[EUR][1000 genomes]
rs17080460	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56252829	1.00[EUR][1000 genomes]
rs59303380	1.00[EUR][1000 genomes]
rs73778945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778952	1.00[EUR][1000 genomes]
rs73778957	1.00[EUR][1000 genomes]
rs73778960	1.00[EUR][1000 genomes]
rs73778961	1.00[EUR][1000 genomes]
rs73778963	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73778964	1.00[EUR][1000 genomes]
rs73778968	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73778969	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7741642	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149243600-149262600	Weak transcription	Primary B cells from cord blood	blood
2	chr6:149246000-149262600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:149246800-149262400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:149247200-149258800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:149247200-149259000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:149247800-149268800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:149252800-149257600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:149253800-149257600	Enhancers	HSMMtube	muscle
9	chr6:149253800-149262600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:149254600-149257600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:149254600-149257600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:149254600-149257600	Enhancers	Fetal Muscle Leg	muscle
13	chr6:149254600-149257600	Enhancers	NHDF-Ad	bronchial
14	chr6:149254800-149257600	Enhancers	Fetal Brain Male	brain
15	chr6:149254800-149268800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:149255200-149257600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr6:149255400-149257400	Enhancers	HSMM	muscle
18	chr6:149255400-149257600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:149255400-149257600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:149255400-149257600	Enhancers	Fetal Stomach	stomach
21	chr6:149255600-149257400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:149255600-149257600	Enhancers	Colon Smooth Muscle	Colon
23	chr6:149255600-149257800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:149255600-149268600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:149255800-149262600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:149255800-149262800	Weak transcription	Left Ventricle	heart
27	chr6:149255800-149264800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:149255800-149268800	Weak transcription	Brain Substantia Nigra	brain
29	chr6:149255800-149268800	Weak transcription	Fetal Kidney	kidney
30	chr6:149256000-149257600	Enhancers	NH-A	brain
31	chr6:149256200-149257400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:149256400-149257600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:149256400-149257600	Enhancers	HMEC	breast
34	chr6:149256400-149264800	Weak transcription	Fetal Heart	heart
35	chr6:149256400-149266400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:149256600-149257800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:149256600-149292600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr6:149256800-149264400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:149257000-149257400	Flanking Active TSS	Osteobl	bone
40	chr6:149257000-149268400	Weak transcription	Ovary	ovary
41	chr6:149257000-149285000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr6:149257200-149257400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr6:149257200-149257400	Flanking Active TSS	NHEK	skin
44	chr6:149257200-149258400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:149257200-149261800	Weak transcription	Aorta	Aorta
46	chr6:149257200-149266000	Weak transcription	Fetal Lung	lung

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