Variant report

Variant	rs56252829
Chromosome Location	chr6:149247966-149247967
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149190451..149193152-chr6:149247547..149250037,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10499255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1320576	1.00[EUR][1000 genomes]
rs17079955	1.00[EUR][1000 genomes]
rs17080135	1.00[EUR][1000 genomes]
rs17080460	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59303380	1.00[EUR][1000 genomes]
rs60626199	1.00[EUR][1000 genomes]
rs73778945	1.00[EUR][1000 genomes]
rs73778952	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778957	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778960	1.00[EUR][1000 genomes]
rs73778961	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778963	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778968	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778969	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7741642	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149211600-149255400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:149226600-149252800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:149226600-149255600	Weak transcription	Ovary	ovary
4	chr6:149235400-149253000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:149238400-149252600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:149240600-149254600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:149240600-149256400	Weak transcription	Aorta	Aorta
8	chr6:149243600-149262600	Weak transcription	Primary B cells from cord blood	blood
9	chr6:149245200-149248000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:149246000-149255600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:149246000-149262600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:149246800-149262400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:149247200-149251800	Weak transcription	Fetal Lung	lung
14	chr6:149247200-149258800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:149247200-149259000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:149247400-149248400	Enhancers	Fetal Heart	heart
17	chr6:149247600-149248000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:149247600-149248000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:149247800-149254600	Weak transcription	Psoas Muscle	Psoas
20	chr6:149247800-149268800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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