Variant report

Variant	rs13207881
Chromosome Location	chr6:76457335-76457336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr6:76457139-76457401	T-47D	breast:	n/a	n/a
2	JUND	chr6:76457069-76457656	MCF-7	breast:	n/a	chr6:76457502-76457513
3	GATA3	chr6:76456888-76457836	MCF-7	breast:	n/a	n/a
4	HDAC2	chr6:76456982-76457732	MCF-7	breast:	n/a	chr6:76457053-76457067
5	JUND	chr6:76457076-76457533	T-47D	breast:	n/a	chr6:76457502-76457513
6	GATA3	chr6:76457100-76457448	T-47D	breast:	n/a	n/a
7	FOSL2	chr6:76456989-76457628	MCF-7	breast:	n/a	n/a
8	TEAD4	chr6:76457023-76457512	MCF-7	breast:	n/a	n/a
9	JUND	chr6:76456977-76457727	MCF-7	breast:	n/a	chr6:76457502-76457513
10	SETDB1	chr6:76457186-76457770	U2OS	brain:	n/a	n/a
11	EP300	chr6:76457015-76457517	T-47D	breast:	n/a	chr6:76457059-76457068
12	ELF1	chr6:76457027-76457654	MCF-7	breast:	n/a	n/a
13	NR2F2	chr6:76457048-76457639	MCF-7	breast:	n/a	n/a
14	ARID3A	chr6:76457201-76457496	HepG2	liver:	n/a	n/a
15	GATA3	chr6:76456963-76457917	MCF-7	breast:	n/a	chr6:76457843-76457853
16	EP300	chr6:76457180-76457435	T-47D	breast:	n/a	n/a
17	FOSL1	chr6:76457208-76457797	HCT-116	colon:	n/a	n/a
18	GATA3	chr6:76457125-76457473	MCF-7	breast:	n/a	n/a
19	SIN3AK20	chr6:76456870-76457774	MCF-7	breast:	n/a	n/a
20	FOSL1	chr6:76456975-76458587	HCT-116	colon:	n/a	chr6:76458225-76458235 chr6:76458225-76458234 chr6:76458225-76458235 chr6:76458227-76458238 chr6:76458225-76458235 chr6:76458225-76458235 chr6:76457843-76457852
21	ZNF217	chr6:76457075-76457503	MCF-7	breast:	n/a	n/a
22	FOSL2	chr6:76457022-76457721	MCF-7	breast:	n/a	n/a
23	HDAC2	chr6:76457096-76457670	MCF-7	breast:	n/a	n/a
24	POLR2A	chr6:76457239-76457376	MCF10A-Er-Src	breast:	n/a	n/a
25	TCF7L2	chr6:76457059-76457608	MCF-7	breast:	n/a	n/a
26	GATA3	chr6:76457052-76457814	MCF-7	breast:	n/a	n/a
27	NR2F2	chr6:76457001-76457683	MCF-7	breast:	n/a	n/a
28	SP1	chr6:76456953-76457781	HCT-116	colon:	n/a	n/a
29	JUND	chr6:76457084-76457747	HCT-116	colon:	n/a	chr6:76457502-76457513
30	GATA3	chr6:76457036-76457554	T-47D	breast:	n/a	n/a
31	EP300	chr6:76456967-76457645	MCF-7	breast:	n/a	chr6:76457059-76457068

No.	Distal block	Cell Line	Cell type
1	chr6:76456068..76458008-chr6:76564755..76567247,2	MCF-7	breast:
2	chr6:76311833..76313694-chr6:76456932..76459481,3	MCF-7	breast:
3	chr6:76310925..76313590-chr6:76457201..76459634,2	K562	blood:
4	chr6:76457017..76459821-chr6:76526945..76528874,2	MCF-7	breast:
5	chr6:76457060..76461197-chr6:76473704..76478813,6	MCF-7	breast:
6	chr6:41039866..41042611-chr6:76456761..76459603,2	MCF-7	breast:

Variant related genes	Relation type
MYO6	TF binding region
ENSG00000124596	Chromatin interaction
ENSG00000252156	Chromatin interaction
ENSG00000001167	Chromatin interaction
ENSG00000112701	Chromatin interaction
ENSG00000196586	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13194998	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs13195806	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13200677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34254814	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34985418	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35724689	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62414771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62414772	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027915	chr6:75893542-76510113	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv538311	chr6:75893542-76510113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv1022428	chr6:76023118-76575620	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
4	nsv538312	chr6:76023118-76575620	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
5	nsv1032245	chr6:76045537-76545703	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
6	nsv538313	chr6:76045537-76545703	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
7	nsv1019328	chr6:76154751-76604197	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
8	nsv538314	chr6:76154751-76604197	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv1023331	chr6:76238459-76482117	Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
10	nsv538315	chr6:76238459-76482117	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
11	nsv1017542	chr6:76238459-76537447	Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
12	nsv1031745	chr6:76257913-76493355	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
13	nsv538316	chr6:76257913-76493355	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
14	nsv533100	chr6:76257914-76493354	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
15	nsv1023749	chr6:76287578-76482117	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
16	nsv538317	chr6:76287578-76482117	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
17	nsv1021090	chr6:76306100-76759397	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
18	nsv538318	chr6:76306100-76759397	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
19	nsv886184	chr6:76320846-76462711	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
20	nsv886185	chr6:76320846-76498109	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
21	nsv886186	chr6:76328955-76469115	Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
22	nsv1032961	chr6:76343575-76788852	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
23	nsv932201	chr6:76365548-77219650	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
24	nsv886187	chr6:76408950-76469115	Strong transcription Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
25	nsv1028340	chr6:76410921-76960225	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
26	nsv538319	chr6:76410921-76960225	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
27	nsv886188	chr6:76411843-76469115	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76450600-76458000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:76451200-76458200	Weak transcription	Esophagus	oesophagus
3	chr6:76451800-76458000	Weak transcription	Brain Anterior Caudate	brain
4	chr6:76455800-76458200	Weak transcription	Gastric	stomach
5	chr6:76456400-76458000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:76456400-76458000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:76456400-76458000	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:76456400-76458000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:76456400-76458000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:76456400-76458200	Weak transcription	Pancreas	Pancrea
11	chr6:76456600-76458000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:76456600-76458200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:76456600-76458200	Weak transcription	Small Intestine	intestine
14	chr6:76456800-76458000	Enhancers	Fetal Intestine Small	intestine
15	chr6:76457000-76457600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr6:76457000-76458000	Bivalent Enhancer	Primary B cells from cord blood	blood
17	chr6:76457000-76458200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
18	chr6:76457000-76458200	Weak transcription	Placenta	Placenta
19	chr6:76457200-76457400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:76457200-76457400	Enhancers	Duodenum Mucosa	Duodenum
21	chr6:76457200-76458000	Enhancers	HepG2	liver
22	chr6:76457200-76458000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
23	chr6:76457200-76458200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood

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