Variant report

Variant	rs1328854
Chromosome Location	chr6:73234147-73234148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1202104	1.00[JPT][hapmap]
rs1202109	1.00[JPT][hapmap]
rs1328853	0.86[ASN][1000 genomes]
rs16882514	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58558192	1.00[ASN][1000 genomes]
rs6453587	0.90[EUR][1000 genomes]
rs72939316	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72939331	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72939337	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72939341	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72946163	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72946166	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72946175	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72946180	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72946188	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72946195	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72946200	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72948110	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72948112	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72948119	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72948122	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72948128	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72948131	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72948134	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72950036	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72950038	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9446694	0.81[ASW][hapmap];1.00[MKK][hapmap]
rs990501	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73232400-73234200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:73232400-73234400	Enhancers	NHEK	skin
3	chr6:73232800-73234400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:73232800-73243000	Weak transcription	K562	blood
5	chr6:73233600-73234200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:73234000-73235000	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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