Variant report

Variant	rs72950036
Chromosome Location	chr6:73310603-73310604
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:73310567-73310633	Medullo	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000181514	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1328854	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16882514	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6453587	0.84[EUR][1000 genomes]
rs72939316	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72939331	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72939337	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72939341	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72946163	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72946166	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72946175	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72946180	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72946188	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946195	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946200	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948110	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948112	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948119	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948122	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948128	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948131	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948134	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73310600-73312000	Weak transcription	H9 Cell Line	embryonic stem cell

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