Variant report

Variant	rs72948134
Chromosome Location	chr6:73274939-73274940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73271338..73274048-chr6:73274112..73275955,2	K562	blood:
2	chr6:73270229..73272908-chr6:73274722..73276357,2	MCF-7	breast:
3	chr6:73270287..73274048-chr6:73274112..73277683,5	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1328854	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16882514	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6453587	0.95[EUR][1000 genomes]
rs72939316	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72939331	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72939337	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72939341	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72946163	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72946166	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72946175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72946180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72946188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946200	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948110	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948122	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948128	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950036	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950038	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv981067	chr6:73273080-73276402	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73274600-73275200	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links