Variant report
| Variant | rs72939331 |
|---|---|
| Chromosome Location | chr6:73211497-73211498 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1328854 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs16882514 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6453587 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72939316 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72939337 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72939341 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72946163 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72946166 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72946175 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72946180 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72946188 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72946195 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72946200 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72948110 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72948112 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72948119 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72948122 | 0.92[EUR][1000 genomes] |
| rs72948128 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72948131 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72948134 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72950036 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs72950038 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023809 | chr6:73157813-73477997 | Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv538303 | chr6:73157813-73477997 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:73209600-73213800 | Weak transcription | Fetal Brain Male | brain |
