Variant report
| Variant | rs72948122 |
|---|---|
| Chromosome Location | chr6:73272375-73272376 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:73270229..73272908-chr6:73274722..73276357,2 | MCF-7 | breast: | |
| 2 | chr6:73270287..73274048-chr6:73274112..73277683,5 | K562 | blood: | |
| 3 | chr6:73152078..73154373-chr6:73270636..73272523,2 | K562 | blood: | |
| 4 | chr6:73271338..73274048-chr6:73274112..73275955,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1328854 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs16882514 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6453587 | 0.92[EUR][1000 genomes] |
| rs72939316 | 0.92[EUR][1000 genomes] |
| rs72939331 | 0.92[EUR][1000 genomes] |
| rs72939337 | 0.92[EUR][1000 genomes] |
| rs72939341 | 0.92[EUR][1000 genomes] |
| rs72946163 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72946166 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72946175 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72946180 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72946188 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72946195 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72946200 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72948110 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72948112 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72948119 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72948128 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72948131 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72948134 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72950036 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72950038 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023809 | chr6:73157813-73477997 | Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv538303 | chr6:73157813-73477997 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:73272000-73272800 | Weak transcription | K562 | blood |
