Variant report
| Variant | rs72946163 |
|---|---|
| Chromosome Location | chr6:73229910-73229911 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr6:73229579-73229928 | HepG2 | liver: | n/a | chr6:73229758-73229771 chr6:73229758-73229769 |
| 2 | CEBPB | chr6:73229610-73229933 | IMR90 | lung: | n/a | chr6:73229758-73229771 chr6:73229758-73229769 |
| 3 | CEBPB | chr6:73229588-73229957 | K562 | blood: | n/a | chr6:73229758-73229771 chr6:73229758-73229769 |
| 4 | JUND | chr6:73229826-73229972 | H1-hESC | embryonic stem cell: | n/a | chr6:73229913-73229920 |
| 5 | CEBPB | chr6:73229597-73229933 | H1-hESC | embryonic stem cell: | n/a | chr6:73229758-73229771 chr6:73229758-73229769 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000217483 | TF binding region |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1328854 | 0.96[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs16882514 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6453587 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72939316 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72939331 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72939337 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72939341 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72946166 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72946175 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72946180 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72946188 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72946195 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72946200 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72948110 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72948112 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72948119 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72948122 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72948128 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72948131 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72948134 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72950036 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs72950038 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023809 | chr6:73157813-73477997 | Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv538303 | chr6:73157813-73477997 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
