Variant report

Variant	rs13312891
Chromosome Location	chr8:90976799-90976800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:90969741..90972805-chr8:90974123..90977910,4	K562	blood:
2	chr8:90972565..90976649-chr8:90976660..90979735,4	MCF-7	breast:
3	chr8:90974711..90977357-chr8:90995076..90998424,3	MCF-7	breast:
4	chr8:90975533..90977445-chr8:90980488..90983211,2	K562	blood:
5	chr8:90965529..90967195-chr8:90975050..90977026,2	MCF-7	breast:
6	chr8:90976407..90978476-chr8:90995188..90998070,2	K562	blood:
7	chr8:90975334..90977907-chr8:90996289..90998070,2	K562	blood:
8	chr8:90975523..90977214-chr8:90977319..90979000,2	K562	blood:
9	chr8:90957962..90962129-chr8:90974305..90978101,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs13312836	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312854	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312860	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312862	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312863	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312864	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16900593	1.00[MEX][hapmap]
rs16900617	1.00[MEX][hapmap]
rs1805884	1.00[MEX][hapmap]
rs2308961	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55663774	1.00[AMR][1000 genomes]
rs55683922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55978729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56190114	1.00[AMR][1000 genomes]
rs58089706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59899647	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61365155	1.00[AMR][1000 genomes]
rs6987476	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694306	1.00[AMR][1000 genomes]
rs73694307	1.00[AMR][1000 genomes]
rs73694313	1.00[AMR][1000 genomes]
rs73694316	1.00[AMR][1000 genomes]
rs73696843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696853	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696854	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs769417	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7813347	1.00[MEX][hapmap]
rs7823648	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7823987	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9969533	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
2	chr8:90924800-90986600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:90925400-90979200	Weak transcription	Gastric	stomach
4	chr8:90927000-90978000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr8:90927600-90988400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:90927800-90996000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:90942600-90977400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:90942600-90982600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr8:90944400-90977000	Strong transcription	Dnd41	blood
10	chr8:90944400-90982800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr8:90944600-90982000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr8:90944800-90984400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:90961800-90977600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:90962000-90994400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:90962000-90995000	Weak transcription	Aorta	Aorta
16	chr8:90962400-90980200	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr8:90962400-90982000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:90962600-90982400	Weak transcription	Stomach Mucosa	stomach
19	chr8:90962600-90983400	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr8:90963000-90982000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:90963800-90977000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:90964200-90976800	Strong transcription	Liver	Liver
23	chr8:90964600-90976800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:90964600-90977000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:90965000-90984200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr8:90968800-90976800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:90968800-90977200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr8:90968800-90977600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr8:90968800-90978000	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr8:90969000-90976800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr8:90969000-90977200	Strong transcription	Adipose Nuclei	Adipose
32	chr8:90969000-90981800	Strong transcription	Primary B cells from cord blood	blood
33	chr8:90969200-90976800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr8:90969400-90976800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:90969400-90977000	Strong transcription	Primary hematopoietic stem cells	blood
36	chr8:90969400-90977000	Strong transcription	Fetal Muscle Trunk	muscle
37	chr8:90969400-90977200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr8:90969600-90983400	Strong transcription	HSMM	muscle
39	chr8:90969800-90976800	Strong transcription	Fetal Lung	lung
40	chr8:90969800-90977000	Strong transcription	Primary B cells from peripheral blood	blood
41	chr8:90969800-90977000	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr8:90970600-90988200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr8:90970800-90977000	Strong transcription	Hela-S3	cervix
44	chr8:90970800-90979200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr8:90970800-90983200	Weak transcription	Fetal Brain Female	brain
46	chr8:90970800-90988200	Weak transcription	Pancreas	Pancrea
47	chr8:90970800-90993200	Weak transcription	Psoas Muscle	Psoas
48	chr8:90971000-90977200	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr8:90971000-90994000	Weak transcription	Brain Substantia Nigra	brain
50	chr8:90971200-90994400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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