Variant report

Variant	rs13312922
Chromosome Location	chr8:90967869-90967870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90951003..90953709-chr8:90966366..90969265,2	K562	blood:
2	chr8:90961129..90964552-chr8:90965641..90969617,4	K562	blood:
3	chr8:90965461..90967968-chr8:90968240..90970212,2	MCF-7	breast:
4	chr8:90966049..90968226-chr8:90995390..90998122,3	MCF-7	breast:
5	chr8:90961168..90963768-chr8:90966157..90968949,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13312836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2308961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55663774	1.00[AMR][1000 genomes]
rs55683922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55978729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56190114	1.00[AMR][1000 genomes]
rs58089706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59899647	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61365155	1.00[AMR][1000 genomes]
rs6987476	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694306	1.00[AMR][1000 genomes]
rs73694307	1.00[AMR][1000 genomes]
rs73694313	1.00[AMR][1000 genomes]
rs73694316	1.00[AMR][1000 genomes]
rs73696843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696853	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696854	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs769417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7823648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7823987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
2	chr8:90916600-90969600	Weak transcription	Brain Substantia Nigra	brain
3	chr8:90917600-90975400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr8:90924800-90986600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:90925400-90970200	Weak transcription	Pancreas	Pancrea
6	chr8:90925400-90979200	Weak transcription	Gastric	stomach
7	chr8:90925600-90975200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:90927000-90978000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr8:90927600-90988400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:90927800-90969800	Weak transcription	Esophagus	oesophagus
11	chr8:90927800-90970200	Weak transcription	Spleen	Spleen
12	chr8:90927800-90970400	Weak transcription	Right Ventricle	heart
13	chr8:90927800-90996000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:90928000-90970400	Weak transcription	Small Intestine	intestine
15	chr8:90937200-90969800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr8:90937200-90970400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr8:90937200-90970400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr8:90937600-90969400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr8:90937600-90970000	Weak transcription	Lung	lung
20	chr8:90938200-90974600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr8:90938400-90970000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:90941400-90970000	Weak transcription	Brain Germinal Matrix	brain
23	chr8:90942600-90977400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr8:90942600-90982600	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr8:90942800-90970000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:90944400-90977000	Strong transcription	Dnd41	blood
27	chr8:90944400-90982800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr8:90944600-90982000	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr8:90944800-90984400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:90947200-90969800	Weak transcription	Brain Angular Gyrus	brain
31	chr8:90948200-90974000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr8:90952200-90970400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr8:90957200-90970000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr8:90961800-90977600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr8:90962000-90969000	Weak transcription	Fetal Heart	heart
36	chr8:90962000-90969600	Weak transcription	Ovary	ovary
37	chr8:90962000-90970400	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr8:90962000-90994400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr8:90962000-90995000	Weak transcription	Aorta	Aorta
40	chr8:90962200-90968000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr8:90962200-90968200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr8:90962200-90969400	Weak transcription	Fetal Stomach	stomach
43	chr8:90962200-90970400	Weak transcription	NHLF	lung
44	chr8:90962400-90970000	Weak transcription	Fetal Intestine Small	intestine
45	chr8:90962400-90970200	Weak transcription	Colon Smooth Muscle	Colon
46	chr8:90962400-90970400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr8:90962400-90980200	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr8:90962400-90982000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr8:90962600-90968000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr8:90962600-90982400	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links