Variant report

Variant	rs73694307
Chromosome Location	chr8:91101499-91101500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91092897..91095397-chr8:91099326..91102045,2	K562	blood:

Variant related genes	Relation type
ENSG00000104327	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13312836	1.00[AMR][1000 genomes]
rs13312854	1.00[AMR][1000 genomes]
rs13312860	1.00[AMR][1000 genomes]
rs13312862	1.00[AMR][1000 genomes]
rs13312863	1.00[AMR][1000 genomes]
rs13312864	1.00[AMR][1000 genomes]
rs13312874	1.00[AMR][1000 genomes]
rs13312891	1.00[AMR][1000 genomes]
rs13312922	1.00[AMR][1000 genomes]
rs13312931	1.00[AMR][1000 genomes]
rs2308961	1.00[AMR][1000 genomes]
rs55663774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55683922	1.00[AMR][1000 genomes]
rs55978729	1.00[AMR][1000 genomes]
rs56190114	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58089706	1.00[AMR][1000 genomes]
rs59899647	1.00[AMR][1000 genomes]
rs61365155	1.00[AMR][1000 genomes]
rs6987476	1.00[AMR][1000 genomes]
rs73694306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694313	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694316	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696843	1.00[AMR][1000 genomes]
rs73696845	1.00[AMR][1000 genomes]
rs73696848	1.00[AMR][1000 genomes]
rs73696850	1.00[AMR][1000 genomes]
rs73696851	1.00[AMR][1000 genomes]
rs73696853	1.00[AMR][1000 genomes]
rs73696854	1.00[AMR][1000 genomes]
rs769417	1.00[AMR][1000 genomes]
rs7823648	1.00[AMR][1000 genomes]
rs7823987	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv34347	chr8:91101339-91179126	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91100600-91102200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:91100600-91102400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links