Variant report

Variant	rs55683922
Chromosome Location	chr8:90972946-90972947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90914522..90916369-chr8:90971392..90973595,2	MCF-7	breast:
2	chr8:90964112..90965631-chr8:90971836..90974898,3	MCF-7	breast:
3	chr8:90970967..90973229-chr8:90983797..90986083,3	MCF-7	breast:
4	chr8:90955116..90956985-chr8:90972344..90976396,3	K562	blood:
5	chr8:90972576..90976276-chr8:90995328..90998073,3	K562	blood:
6	chr8:90972565..90976649-chr8:90976660..90979735,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104320	Chromatin interaction
ENSG00000164823	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13312836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2308961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55663774	1.00[AMR][1000 genomes]
rs55978729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56190114	1.00[AMR][1000 genomes]
rs58089706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59899647	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61365155	1.00[AMR][1000 genomes]
rs6987476	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694306	1.00[AMR][1000 genomes]
rs73694307	1.00[AMR][1000 genomes]
rs73694313	1.00[AMR][1000 genomes]
rs73694316	1.00[AMR][1000 genomes]
rs73696843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696853	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696854	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs769417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7823648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7823987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
2	chr8:90917600-90975400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr8:90924800-90986600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:90925400-90979200	Weak transcription	Gastric	stomach
5	chr8:90925600-90975200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:90927000-90978000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:90927600-90988400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:90927800-90996000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:90938200-90974600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr8:90942600-90977400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr8:90942600-90982600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr8:90944400-90977000	Strong transcription	Dnd41	blood
13	chr8:90944400-90982800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:90944600-90982000	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr8:90944800-90984400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:90948200-90974000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr8:90961800-90977600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:90962000-90994400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr8:90962000-90995000	Weak transcription	Aorta	Aorta
20	chr8:90962400-90980200	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr8:90962400-90982000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:90962600-90982400	Weak transcription	Stomach Mucosa	stomach
23	chr8:90962600-90983400	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr8:90963000-90982000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:90963800-90976600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr8:90963800-90977000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr8:90964000-90973200	Strong transcription	Fetal Intestine Large	intestine
28	chr8:90964200-90973600	Strong transcription	Fetal Thymus	thymus
29	chr8:90964200-90976800	Strong transcription	Liver	Liver
30	chr8:90964600-90976800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr8:90964600-90977000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr8:90965000-90984200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr8:90967800-90973000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr8:90968000-90973200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr8:90968800-90974200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr8:90968800-90976400	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr8:90968800-90976800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr8:90968800-90977200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr8:90968800-90977600	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr8:90968800-90978000	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr8:90969000-90974000	Strong transcription	Placenta	Placenta
42	chr8:90969000-90975200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr8:90969000-90976800	Strong transcription	Duodenum Mucosa	Duodenum
44	chr8:90969000-90977200	Strong transcription	Adipose Nuclei	Adipose
45	chr8:90969000-90981800	Strong transcription	Primary B cells from cord blood	blood
46	chr8:90969200-90973200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr8:90969200-90976400	Strong transcription	Primary T cells from cord blood	blood
48	chr8:90969200-90976800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr8:90969400-90973000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr8:90969400-90974000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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