Variant report

Variant	rs6987476
Chromosome Location	chr8:91058350-91058351
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13312836	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312854	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312860	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312862	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312863	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312864	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312874	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312891	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312922	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312931	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2308961	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55663774	1.00[AMR][1000 genomes]
rs55683922	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55978729	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56190114	1.00[AMR][1000 genomes]
rs58089706	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59899647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61365155	1.00[AMR][1000 genomes]
rs73694306	1.00[AMR][1000 genomes]
rs73694307	1.00[AMR][1000 genomes]
rs73694313	1.00[AMR][1000 genomes]
rs73694316	1.00[AMR][1000 genomes]
rs73696843	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696845	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696848	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696850	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696851	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs769417	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7823648	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7823987	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91015600-91066200	Weak transcription	Hela-S3	cervix
2	chr8:91018600-91065400	Weak transcription	HMEC	breast
3	chr8:91027600-91066800	Weak transcription	NHEK	skin
4	chr8:91029400-91066000	Weak transcription	HUVEC	blood vessel
5	chr8:91032000-91064000	Weak transcription	Fetal Brain Male	brain
6	chr8:91032000-91064800	Weak transcription	NHLF	lung
7	chr8:91033800-91064400	Weak transcription	NH-A	brain
8	chr8:91040200-91059200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:91041400-91058800	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr8:91046800-91059200	Strong transcription	Adipose Nuclei	Adipose
11	chr8:91047200-91058800	Strong transcription	Primary B cells from cord blood	blood
12	chr8:91048200-91058600	Strong transcription	Primary B cells from peripheral blood	blood
13	chr8:91048200-91058600	Strong transcription	Stomach Smooth Muscle	stomach
14	chr8:91048200-91058800	Strong transcription	Duodenum Mucosa	Duodenum
15	chr8:91048200-91059000	Strong transcription	Primary T cells from cord blood	blood
16	chr8:91048200-91059000	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr8:91048200-91059000	Strong transcription	Liver	Liver
18	chr8:91048600-91058600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:91048600-91058800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:91048600-91059000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:91049000-91058600	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr8:91049200-91058400	Strong transcription	Placenta	Placenta
23	chr8:91049600-91066800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr8:91049800-91067200	Weak transcription	Osteobl	bone
25	chr8:91050200-91065000	Weak transcription	Small Intestine	intestine
26	chr8:91050200-91066800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr8:91051600-91059000	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr8:91052000-91060200	Weak transcription	K562	blood
29	chr8:91052400-91061200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr8:91052400-91067200	Weak transcription	Brain Substantia Nigra	brain
31	chr8:91052400-91069200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr8:91052600-91067000	Weak transcription	Brain Angular Gyrus	brain
33	chr8:91053000-91065000	Weak transcription	Psoas Muscle	Psoas
34	chr8:91053200-91058600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr8:91053400-91059000	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr8:91053600-91059000	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr8:91053800-91058400	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr8:91053800-91058600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr8:91053800-91058600	Strong transcription	Fetal Thymus	thymus
40	chr8:91054400-91058600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr8:91054400-91058600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr8:91054400-91059000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr8:91054600-91058600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr8:91054600-91058600	Strong transcription	Fetal Intestine Large	intestine
45	chr8:91054600-91059000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr8:91054600-91059000	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr8:91054800-91058600	Strong transcription	Colon Smooth Muscle	Colon
48	chr8:91055000-91059000	Strong transcription	Left Ventricle	heart
49	chr8:91055000-91059200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr8:91055400-91058600	Strong transcription	Primary T helper naive cells from peripheral blood	blood

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