Variant report

Variant	rs73694306
Chromosome Location	chr8:91098879-91098880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13312836	1.00[AMR][1000 genomes]
rs13312854	1.00[AMR][1000 genomes]
rs13312860	1.00[AMR][1000 genomes]
rs13312862	1.00[AMR][1000 genomes]
rs13312863	1.00[AMR][1000 genomes]
rs13312864	1.00[AMR][1000 genomes]
rs13312874	1.00[AMR][1000 genomes]
rs13312891	1.00[AMR][1000 genomes]
rs13312922	1.00[AMR][1000 genomes]
rs13312931	1.00[AMR][1000 genomes]
rs2308961	1.00[AMR][1000 genomes]
rs55663774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55683922	1.00[AMR][1000 genomes]
rs55978729	1.00[AMR][1000 genomes]
rs56190114	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58089706	1.00[AMR][1000 genomes]
rs59899647	1.00[AMR][1000 genomes]
rs61365155	1.00[AMR][1000 genomes]
rs6987476	1.00[AMR][1000 genomes]
rs73694307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694313	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694316	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696843	1.00[AMR][1000 genomes]
rs73696845	1.00[AMR][1000 genomes]
rs73696848	1.00[AMR][1000 genomes]
rs73696850	1.00[AMR][1000 genomes]
rs73696851	1.00[AMR][1000 genomes]
rs73696853	1.00[AMR][1000 genomes]
rs73696854	1.00[AMR][1000 genomes]
rs769417	1.00[AMR][1000 genomes]
rs7823648	1.00[AMR][1000 genomes]
rs7823987	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91095200-91099200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:91098200-91099400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:91098200-91099600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr8:91098200-91099800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:91098200-91099800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:91098200-91100600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:91098400-91099000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:91098400-91099800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:91098400-91100000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:91098600-91099000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr8:91098600-91099200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr8:91098800-91099600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr8:91098800-91099800	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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